Hemicordylus capensis (graceful crag lizard): 128324215
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Entry
128324215 CDS
T08891
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128324215
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128324215
09142 Cell motility
04820 Cytoskeleton in muscle cells
128324215
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcg00535
]
128324215
Proteoglycans [BR:
hcg00535
]
Extracellular matrix (ECM) proteoglycans
Others
128324215
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128324215
NCBI-ProteinID:
XP_053104462
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All DBs
Position
4:complement(209669539..209696297)
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AA seq
171 aa
AA seq
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MADEHIYGLCRAVILAHAAQYAADFRYKCSSACPAANMTLIGPPGPAGEKDHLGLDGLKG
GPGPMGPTGYPGSKGTNGELREKGQKGERGKLSKGLPGPDGHQGLIGFPGYSTISRNDQP
DSLSSPGDSRLPDQLAPAGPPGVPGLCEPKGCSTYSLNLSTQQEPVNGPPV
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaacacatatatggattgtgtcgtgctgtgatcctagcgcacgcagcccag
tatgcagctgacttcagatataaatgttccagtgcttgtcctgctgccaacatgacattg
attggtcccccaggaccagcaggagaaaaggatcatctaggtcttgatggcctaaaaggt
ggacctggaccaatggggcctactggatatcctggatctaaaggaacgaatggagaattg
agagaaaagggtcagaagggtgagagaggaaagctaagcaagggcctccctggacccgat
gggcaccaaggtttaataggctttcctggctattctacaatttctagaaatgaccagcca
gactcactaagctccccaggagacagcagacttccagaccagctagcacctgctggtcct
ccaggtgtccctggactatgtgaaccaaaaggctgtagcacttacagtctgaatctgtcg
actcaacaggaaccagtaaatgggccccctgtttaa
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