Hemicordylus capensis (graceful crag lizard): 128334277
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Entry
128334277 CDS
T08891
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128334277 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128334277 (CNOT1)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128334277 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128334277 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128334277
NCBI-ProteinID:
XP_053126835
LinkDB
All DBs
Position
9:1211994..1305858
Genome browser
AA seq
2375 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIENPLHYQKSLKPSPHLFTQLSKVIK
LSKVQEVIFGLALLNSFNPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGPKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLANLMQDVGYGFCTSVEECRNIIAQFGVGEVTAAQVARVLGMMART
HSGLADGIPLQSISAPGSGIWSDGRDKNDGTQTHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQIVVYGVLRGLGLDVFPVDLIYRPWKHAEGQLSFIQYSLINPEIFC
FADYPCHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPLAGMASL
SLGGSAVPHTQSITGFPPNLGSAFSTPQSPAKAFPPLSTQNQNAPFSGISGLSSQLPVGG
LTTGSLGIGTGALGLPAVNNDPFVPRKLNTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKTPLAGQVSTMVTTSTTTTTVAKTTITPVGRVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKSLDEQLSAPKK
DVKQPEELPPIVTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDSTQPTGILAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSIPHTLAMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERTVAHITEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMLDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNP
AANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVR
QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL
ISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYKGTLRVLLV
LLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIA
PRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLY
VGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaatcggcacggc
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgatccaggagtgtgcatcc
ttgattacaaagccaaactttatttcgacactgtcctatgctattgaaaatcctttgcac
tatcagaagagtcttaagccgtcaccacatctcttcactcagctgagcaaagttatcaaa
ttaagcaaggttcaagaggttatttttggccttgctttgctgaactccttcaacccagat
cttcgaggttttgctgctcagtttattaaacagaagcttcctgatcttctgcgttcatac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgccatagaggtc
ttgcacctcctcctctcccatctcctctttggaccgaagggagcctttggggttggacag
gaacagattgacgcttttcttaaaactttgcgtagagattttccccaggaacgttgcccc
gtggtgcttgcaccactcctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagcaaaaaccatgatggagagctctcttgcaaacctcatgcag
gatgttggctatggcttttgtacaagtgttgaagaatgccgtaacataatcgcacagttt
ggtgttggagaggtcacagctgctcaggttgccagggttttgggaatgatggctcgaaca
cactcgggattggcagatggcattcctttgcagtccatctctgctcctggtagtggaata
tggagtgatggaagggataaaaatgatggaacacaaacccatacgtggaatgtggaggtt
ttgattgatgtgctgaaagagctgaatccaagtttgaacttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaagggcttgcagattgtggtgtatggt
gtcctaagagggctaggactggatgtcttccccgttgacctcatatatagaccttggaaa
catgcagaaggccagctttcattcatccagtattccctcattaaccccgagatcttctgt
tttgctgactacccctgtcatgctgttgccacagatatcttgaaagcaccacctgaggat
gacaaccgagaaatcgccacgtggaagagcctggacttgatagagtctctgctgcggctg
gcagaggtggggcagtatgagcaggttaagcagctcttcagcttccccatcaagcactgc
cccgatatgctggtattagccttactgcagatcaacacttcctggcatactttgcggcat
gaactcatctccacgctgatgcctatttttcttggcaaccaccccaactctgccatcatc
ctgcattatgcttggcatgggcagggtcagtctccttcaattcgccaactcatcatgcat
gctatggcagaatggtacatgagaggggaacagtatgaccaagcaaaattgtcacgcatt
ctagatgtggcccaagacttgaaggcgttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaactagacaaatgg
cttacagataaaattcgcgagcatggggagcccttcattcaagcctgtatgaccttctta
aaaaggagatgcccctctatcttgggaggccttgccccagagaaggaccagcccaaaagt
gcgcagcttcctccagagacattggcaacgatgctggcttgcctgcaagcgtgtgccgga
aatgtctcacaagagctgtcagaaaccatcctcaccatggtagccaactgtagcaatgtg
atgaacaaagctaggcagccaccgcctggagttatgcccaaaggacgcccacccagtact
agcagtctggatgccatctctcctgtacagattgatccgcttgctgggatggcatctctc
agtttgggtggctcagcagttccacatacccagagtattacaggctttcctccaaatctg
ggttcagcttttagtacgcctcaatcaccagcaaaagcgtttccaccgctttccacacaa
aaccagaatgcaccctttagtgggattagtggactctcttcacagcttccagtaggtggt
cttacgacgggtagtctggggataggaactggagccctgggcctccctgctgtcaacaat
gacccattcgtgccaaggaagctgaacacgtcaggactgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtatggccagaggcaaatcagcactttagc
aaagagatcgatgatgaagccaacagctattttcagcgtatttataatcatccaccacac
ccaactatgtctgtagatgaggtgttagaaatgctacagaggtttaaggactccaacatt
aaacgggaacgtgaagtatttaactgtatgctgaggaacttgtttgaggagtatcggttt
ttcccccagtacccagataaagagctgcacataacagcctgcctctttggtgggataata
gagaaaggactggtcacctacatggcactgggcctggccttgcgctatgtgcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttccctcatcacctgcaggagtatattgaatatggacagcaatccagagaccct
ccggtgaagatgcaggggtcaatcaccacccctggcagtattgcactggcccaggctcag
gcccaggcccaggtcccagcaaaaactcctcttgctggtcaagttagcactatggtcacc
acctccaccaccaccactaccgtggcaaagactacaatcactccagtgggccgcgtcagc
ttcaagaaggatgtgccgccttctattaataccaccaacattgataccttgctagtggcc
acagatcaaacggagagaattgttgagccccccgaaaacgtgcaggaaaagattgctttt
atcttcaacaacttgtcgcaatcaaacatgacacaaaaggttgaggaattgaaggaaacc
gtgaaagaagagttcatgccttgggtttcgcagtaccttgtgatgaagagagttagtatt
gagccaaactttcacagtctgtattcaaatttcctcgacacacttaagaatccagaattc
aacaaaatggttctgaatgaaacctacagaaatatcaaggtgctgcttacttcagataaa
gctgctgccaacttttcagaccgctcgttgctgaagaatctgggccactggctggggatg
atcacgctggctaaaaacaaacccatcttgcatacggacttggatgtgaaatctttactg
ctggaggcttatgtcaaggggcagcaggagctactgtatgttgtaccatttgttgccaaa
gttttggagtccagtgtaagaagcgtggttttcagacctccaaatccttggacgatggcc
atcatgaatgtcctggcggagttgcaccaggagcatgacttgaaactgaatctgaagttt
gaaattgaagtgctctgcaagaaccttgccctggacatcaatgaactgaagcccgggaac
ctcttgaaagataaggatcggctgaaaagtctggacgagcagctgtctgctccaaagaag
gatgtcaaacagccagaagagctgccgccaattgtcaccactactacttccaccacaccg
gcaaccagcaccacttgcacagctactgttcctccgcagccacagtacagttaccacgat
atcaacgtttactctctgggaggtctggctccacatattactctaaacccaacaatcccc
ttgtttcaagcacacccacaattaaagcagtgtgttcgccaagctatagagcgtgcggtc
caagagcttgttcatccagtggtggatcggtcgattaaaatcgccatgacaacctgtgag
cagatcgtgaggaaggattttgcattagactcggaagagtctcgcatgcgtgttgcagcc
caccacatgatgcggaacctgacggctgggatggcaatgatcacctgcagggagccttta
ctgatgagcatcgccaccaacctgaagaacagctttgccactgcactgcgggcagcttcg
cctcagcagagggagatgatggagcaggcggctgcgcagttggctcaagataactgtgaa
ctggcatgctgcttcattcagaagaccgctgtggaaaaagctggtcctgaaatggacaag
aggctggccacggaatttgagctcagaaaacatgccaggcaagagggccgtaggtactgt
gatcctgtagttttgacttaccaagctgaacggatgccagaacagatcagactgaaggtt
ggtggtgtggacccaaagcaactggctgtttatgaagaatttgcacgcaatgtccctggt
ttcttaccaaccaatgattcaacccaacccacaggaatcctggctcagcctatgaagcaa
gcctgggcaacagacgatgtggcacagatctatgataagtgtatgactgaactggagcag
cacctgcagtccatccctcacaccctggccatgaatccccagactcaggccttacgaagc
ctcttggaggcggtggttgtggctcgaaactcacgggatgctattgcagcccttgggctg
ctccagaaggctgttgagggtttgctggatgccaccagcggtgcagatgctgacctcctg
ctacgttaccgggagtgtcacttacttgtgttgaaagcactgcaagatggccgtgcctat
gggtctccgtggtgtaataagcagatcacaaggtgcctgattgaatgtcgcgatgaatac
aaatataatgttgaggccgtggagctcctgatccgtaaccatctcgttaacatgcagcag
tacgaccttcacttggctcagtcgatggagaatggcttgaactacatggctgtggccttt
gcaatgcagctggtcaaaatcctcttggtggacgagaggaccgttgctcatatcacggaa
gcagatctcttccacaccattgaaactctgatgagaatcaatgctcactccagagggaat
gcgccagaagggttgccgcagctgatggaagtggtacggtccaactatgaagccatgctt
gaccgtgctcacggagggccaaacttcatgatgcattctgggatatctcaggcctccgag
tacgatgatccccctggcctgagagagaaggcagaatatctgctgagggagtgggtgaat
ctctaccactctgctgcagctgggcgtgacagcaccaaagccttctctgcatttgttgga
cagatgcaccagcaaggcatcttaaaaacggacgacttgatcacgcggttcttccgtctt
tgcactgaaatgtgtgtggaaatcagctatcgggcccaagctgagcagcagcacaaccct
gctgccaaccccaccatgatccgtgccaagtgctaccacaatttggatgcctttgtccgc
cttattgcactgctggtgaagcactctggggaggccaccaacaccgtcaccaagatcaac
ctgctcaacaaggttctcgggatagtggtgggggtccttctgcaggatcatgatgttcgt
caaagtgaatttcagcagcttccctaccaccgcattttcatcatgctgttgttagaatta
aatgctcctgaacatgtcctggaaaccatcaactttcagacactcacagccttctgtaac
acatttcacatcctgagacctacaaaagctccaggttttgtttatgcttggctagagttg
atctcccatcggatatttattgcgagaatgctggcacataccccacagcagaaggggtgg
cctatgtatgcccagctgttgattgatctgtttaagtacttggctcctttcctgagaaat
gtggaactcgccaaacctatgcaaattctctacaagggtactctgcgtgtgttgctggtc
ttactacacgatttcccagaattcctttgtgactaccactacgggttctgtgatgtgatt
cctccaaattgcattcagctaaggaatctgatcttgagtgccttcccacgtaacatgagg
cttccggatcctttcactcccaaccttaaggtggacatgctgagtgagattaatattgct
ccacggatactcaccaacttcactggagtgatgccacctcagttcaagaaggacttggac
tcttatctcaagacccgctctccagtcacgttcctgtctgacttgcgcagtaacttgcag
gtgtcgaatgagcctggcaatcgctacaacatccagttgataaatgccttagtgctgtac
gtaggtactcaagccattgcacacatccataacaaaggcagcacgccctccatgagcacc
atcacccactccgctcatatggatatcttccagaatcttgctgtagacctggacacagaa
ggtcggtacctcttcttgaatgcaattgccaatcagttacggtacccaaacagtcacacg
cactacttcagctgcaccatgctgtatttgtttgcagaggccaacactgaagcaattcag
gaacaaatcaccagagttctcttagaacggctgattgtaaataggcctcacccctggggt
ctcctcattaccttcattgagctgattaaaaacccagcatttaagttctggaaccacgag
tttgttcactgtgctccagaaattgaaaagctgttccagtctgttgcacagtgctgtatg
ggccagaaacaggcacaacaggtaatggaaggaactggagctagttag
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integrated database retrieval system
