Hemicordylus capensis (graceful crag lizard): 128336075
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Entry
128336075 CDS
T08891
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128336075 (SMG8)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128336075 (SMG8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
QWRF
Motif
Other DBs
NCBI-GeneID:
128336075
NCBI-ProteinID:
XP_053131190
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All DBs
Position
12:10519662..10526188
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AA seq
1032 aa
AA seq
DB search
MVGSSSAMQGPVRLHELLLQATAAGAEGASSAAASAAPPNSGSGSGPGTGVVAPGEDEEV
CVVGIFGKTALQLSWEKAALVNTVCDRQVFPLFPREGEPGTPPAAAATATPAASAAAPGE
GPDPGEAASPPPPASPSPSSSSSHSSSSSASSCSSSSSSSSSQADYNLLQAYYSQECKVL
YLVLSSICDSRELLRACQELEALGGAPLPPHAEAHAFWKQQEKRHCLRLLYLFSVCHVLL
LAHPTCSFDVTYDRVFRALDGLRQKVLPSLRAAIKDCPVGKDWKLNCRPCPPRLLFLFQL
NGALKVEPPPSRGGLDAGCGGPPEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSV
NCLFTVPANQAFVYIVAGGPQGGDDPIATLLDQLRGACTAREAEAASLGLAGPRRYQLMR
PGRPPLSFQAESGHGGAGGSSSGQLVDCTLREFLFQHVELVLGKKGFDDSVGRNPQPSHF
ELPTYQKWVATALKLYEVAVEGKESDPASLAGELTSKILGSVKVLEGYLDIDTKFSENRC
QKALPLAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYALQLHEDCYKFWS
NGHQLCEERSLTDQHCVHKFHLLPKAGEKPEPDRNPPVLYHNSRARSTGACNCGRKQAPR
DDPFDIKAANYDFYQLLEEKCCGKLDHINFPIFQPSTPDPAPAKNETSPSPPEGEAEKLK
EKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQGGGNNAEAHGQVTDSKGEKRPSLVDR
QASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFILGTNYLMPWD
IVIRTRTEEEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRDDVARAFVGFEYEDARGRRF
MCSGPEKIMKVMGGGPKESALKALNSDMPLYILSSNPGRGLKPHYAQLMRLFVVVPDAPL
QITMTPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENQQLMTH
KVLRGVLKAVIQ
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggtggggtcgagtagcgccatgcaaggccccgtccggctgcacgagctgctgctgcaa
gccactgccgcgggagcggagggggcgagcagcgccgcggccagcgccgccccgcctaac
tccggcagcggcagcggccccggcaccggggtagttgccccgggggaggacgaggaggtg
tgcgtggtgggcatcttcggcaagacggcgctgcagctcagctgggagaaggcggccctg
gtcaacaccgtctgcgacaggcaggtcttcccgctcttcccgcgggagggcgagcccggg
actccccccgccgctgctgccaccgccacccctgctgcctccgctgcagccccgggggag
ggccccgatccgggggaagccgcctctccccctccccccgcttcgccctccccctcctct
tcttcctcccactcctcctcttcttccgcctcctcctgctcctcttcctcttcctcctcc
tcctcgcaggcggactacaacctgctgcaggcctactacagccaggagtgcaaggtgctg
tacctggtgctgagctccatctgtgacagccgggagctgctgcgggcctgccaggagctg
gaggccctggggggcgccccgctgcccccccacgccgaggcccacgccttctggaagcag
caggagaagcgccactgcctgcggctgctctacctcttctccgtctgccacgtgctgctg
ctggcccaccccacctgctccttcgacgtcacctacgaccgggtcttccgggccctggac
gggctgcggcagaaggtcctgccctccctgcgggccgccatcaaggactgccccgtcggc
aaggactggaagctcaactgccggccctgcccgccccgcctcctcttcctcttccagctc
aacggggccctcaaggtggagcccccacccagccgggggggcctggatgccggctgcggt
ggtcccccggagaagccgccccccaagaagcattcccccaagcgccgcctccagcacgcc
ctggaggaccagatctaccgcatcttccgcaagagccgggtcctcaccaaccagagcgtc
aactgcctcttcaccgtcccggccaaccaggcctttgtctacatcgtggccggcgggcca
caggggggcgacgaccccatcgccaccctgctggaccagctgcgcggagcctgcaccgcc
cgggaggcggaggcggcctcgctgggcctggccggaccccgccgctaccagctgatgagg
cccggccggccgccgctctccttccaggcggagagcggccacggcggcgccggggggtcc
tcctcgggccagctggtggactgcaccctgcgggagttcctcttccagcacgtcgagctg
gtcctgggcaagaagggctttgacgacagcgtgggccgcaacccccagccctcccacttt
gagctgcccacctaccagaagtgggtggccacggccctgaagctctacgaggtggccgtg
gagggcaaggagagcgacccggcctccctggcgggcgagctgacctccaagatcctgggc
agcgtcaaggtcctggagggctacctggacatcgacaccaagttctcggagaaccgctgc
cagaaggccctgcccctggcccacagcgcctaccagtccaacctgccccacaactacacc
atgacggtccacaagaaccagctggcccaggccctgcgggtctacagccagcatgcccgg
gggccggccttccacaagtacgccctgcagcttcacgaggactgctacaagttctggagc
aacgggcaccagctgtgcgaagagaggagcctgaccgaccagcactgcgtccacaagttc
cacctgctccccaaagccggtgaaaaaccagaacccgatcggaaccctccggtgttatac
cacaacagccgggcccgctccactggcgcctgcaactgtgggaggaaacaagccccccgg
gatgacccctttgacatcaaagccgccaactatgatttctatcagctgctagaagagaaa
tgctgtgggaagctggaccatatcaacttccccatcttccagcccagcacgccagacccc
gcgcctgccaagaacgagacctctcccagccctccggaaggagaagcggagaagctgaag
gaaaaagagccgcagactcagggagagagcaccagcctcagcttagctctcagcttgggc
cagtccacagacagcctggggacctatcctgctgatccacagggtggagggaacaatgcc
gaggctcatgggcaggtgacggactccaaaggggagaagaggcccagcctggtcgaccgc
caagcctcgacggtggagtatctccctgggatgctgcactcgaattgccccaagggtctc
ctgcccaagttttccagttggtccctggtgaaactgggccccgccaaagcctacaacttc
cacaccggcttggaccagcagggcttcattctgggcacaaactacttgatgccctgggac
atcgtgatccggacgcggacggaggaggagggcgacctcgacacaaattcctggccggcc
cccaacaaggccatccccgggaaacggagcgccgtcgtcatgggccgggggcggcggagg
gacgacgtggcccgggcctttgtgggcttcgagtatgaggacgcccgcggccggcggttc
atgtgctcggggcccgagaagatcatgaaggtgatgggcgggggccccaaggaatcggcc
ctcaaggcgctaaactccgacatgcccctctatatcctctcctcgaatccgggccgaggg
ctgaagccccactacgcccagctgatgcggctctttgtggtggtgcccgacgccccgctc
cagatcaccatgacaccccaggtccagccagggccgcctccctgccccgtattttaccct
gagaagcaagagatcaccctccctcctgacgggctgtgggtcctgcgctttccttacgcc
tacgtgacggagcggggaccctgcttccctccaaaggagaaccagcagctgatgactcac
aaggtcctccgcggagtcctgaaggccgtgatacagtag
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