Hydrogenimonas cancrithermarum: HCR_15710
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Entry
HCR_15710 CDS
T09533
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCR_15710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcj03021
]
HCR_15710 (rpoB)
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_15710 (rpoB)
Enzymes [BR:
hcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCR_15710 (rpoB)
Transcription machinery [BR:
hcj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCR_15710 (rpoB)
DNA repair and recombination proteins [BR:
hcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCR_15710 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
INO80F
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BDY13259
UniProt:
A0ABN6WYD1
LinkDB
All DBs
Position
1530774..1534934
Genome browser
AA seq
1386 aa
AA seq
DB search
MLNNLKSGNRLRVDFAKTPQEIEVPNLLQLQQSSYDNFLMINEKDRSNSGIEHVFRSIFP
IHDPQNRLTLEYAGSEITKPKYTVRECMERGLTYAVSLKMKVRLTLWERNDKTGEKTGVK
DIKEQAIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEEAATGVNKLLYTAQI
IPDRGSWLYFEYDAKDILYVRINKRRKIPVTILFRALGYTKQDILKLFYPLMSIRVKSNK
FLMPFKPENFAGRLEYDVKDEDGNLIIAAGKRLSSKRAKKLVDDGLKWVEYPVDILIERH
LAEPIIDQESGEVLLDTLTQLDEGKLKKIIDNGVEEFVIADDLASGVDQSIINAFHADQE
SLKLLKQTEQIEDENDLSAIRIYKVMRPGEPVTKDAAKAFVKQLFFDPERYDLTRVGRMK
MNHKLGVEVPEYVTVMTDEDIIKTVQYLIRVKNGQGHIDDRDHLGNRRIRAIGELLGNEL
QTGLIKMQKAIRDKMSTMSGNLDELMPHDLINSKMITNTILEFFTSGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLASYSKVN
DLGFIEAPYKKVNEGKVTSEIVYMTATQEEGLTIAPASTKLDEDGNIVEDLIEARRDGEI
LLVDRSEVDYIDLNPLMVVGVAASLIPFLEHDDANRALMGSNMQRQGVPLLIPDAPVVGT
GVEKLIARDAWVSIKAKRAGIVEKVDAKNIYIMGEDEDGAFIDHYVLQKNMRTNQNTTFT
QAPIVKKGDKVDEGQVIADGPNMDQGELAIGKNIMVAFMPWNGYNFEDAIVVSEKLIRED
TFTSVHIYEKEVEARELKHGVEEITRDIPNVREEDIGHLDESGIVKIGTYIKPGMIMVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSMEGVVVDVKIFTKKGYEKDQRAI
RAYEEEKAELDREHHDKLLMVDREEMLRIYSLLGNAVLESDVEIDGKTFKAGEKIGKEVL
EGVNRFALNAIAKHFSEEIQHKYEALKNYFQKEKRKLRDEHEEKLNILEKDDILPNGVTK
LVKVYIATKRKLKVGDKMAGRHGNKGIVSNIVPEMDMPYLEDGTPVEIILNPLGVPSRMN
IGQILEVHLGLVGKRLGQQIQAIFDEKREDFVKELRKKMEEIADVAKLMNAKEMLSQLND
EELIKYARDWAKGVRFATPVFESVDAKEFAKLFEMAKIDSDGKCVLYDGKTGERMKERVN
VGYMYMLKLHHLVDEKMHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAANV
LKEMLTIKSDDVEGRVRAYKAITRGENVPPAGIPETLFVLTKELQSLALDVELLDEEEEN
EETGSN
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgcttaacaatcttaaatcaggaaaccgcttacgtgttgattttgcgaaaactccccag
gagatcgaagtacccaacctcttgcaacttcaacagagcagttacgacaactttttgatg
atcaatgaaaaagatcgatccaacagcggtatcgaacatgttttccgatctatcttccca
atccatgacccacaaaaccgactgacactcgaatatgccggcagtgaaatcaccaagccg
aaatatacagtcagagagtgtatggagcgcggactcacgtatgccgtttcattgaaaatg
aaagtgaggctcacactgtgggaacgcaacgacaagacaggtgagaaaaccggtgtcaaa
gatatcaaagaacaggctattttcgttcgcgatatcccgctaatgaccgatcggacatca
ttcatcatcaacggtgtcgaacgtgttgttgtaaaccagcttcacagaagtcccggcgtc
atctttaaagaagaggaagccgctaccggagtcaacaaacttctctacacggcgcagatc
attcccgatcgaggctcttggctctatttcgagtacgatgcgaaagatatcctctatgtg
cgcatcaacaaacgccgtaagattcctgtaaccattctattcagggcacttggctatacg
aaacaggatattctcaaactcttctaccccctgatgagcatccgtgtcaagagcaacaag
ttcctgatgccgttcaagccggaaaattttgcaggccgtctcgaatacgacgtcaaagat
gaagacggcaatctcattatcgcggcaggcaaacgcctctcttcaaagcgtgcgaaaaaa
cttgtggatgatggcctcaagtgggtcgagtatccagtggatattctcatcgaacgtcat
cttgccgaaccgatcatcgaccaggagagtggtgaggttctgctcgacacgttgacgcag
ctcgacgagggcaagttgaaaaagatcatcgacaacggcgtcgaagagttcgttatcgcc
gacgatctcgccagcggcgtggaccagtcgattatcaacgccttccatgccgatcaggaa
agcctaaagcttctgaagcagacagagcagatcgaggacgagaacgacctctccgcgatt
cgtatctacaaagtgatgcgtccgggtgaaccggtgaccaaagacgcggcgaaagctttt
gtcaaacaactctttttcgatccggagcggtacgacctcacgcgtgtcggacgaatgaag
atgaaccacaaactcggcgtcgaggttcccgagtacgtcacggttatgaccgatgaagat
atcatcaagacggtccagtaccttatccgtgtcaaaaatggccagggacatatcgatgac
cgcgaccaccttggaaaccgacgaatccgtgcgatcggtgaactgctcggaaacgagctt
cagacgggtctcatcaagatgcagaaagcgattcgcgacaagatgagtacgatgagcggt
aatctcgacgagctgatgccacacgacctgatcaactccaagatgatcaccaatacgatt
ctggagttcttcaccagcggccagctgagccagtttatggaccagaccaacccactttcg
gaagtgacacacaaacgacgcctctccgcacttggtgaaggcggcctcgtcaaagagcgc
gcgggcttcgaagtgcgcgacgtccatccgacccattacggccgtatctgtccgatcgaa
acgccggaaggccagaacatcggtcttatcaatacactggcttcctattcgaaagtcaac
gatctcggttttatcgaagcaccttacaaaaaggtcaacgagggcaaagtgacaagcgag
atcgtttacatgacggcgacgcaggaagagggtttgacgatcgcgcctgcgagtacgaaa
ctcgatgaagacggcaatatcgtcgaagatctgatcgaagcgcgacgcgacggtgagatt
ttgcttgtcgaccgcagcgaagtcgactatatcgacctcaatccgctgatggtcgtcggt
gttgcggcgagcctcattccgttcctcgagcacgatgacgccaaccgtgcactgatggga
tcgaacatgcagcgccagggtgtgccgcttttgatccccgatgctccggttgtcggtacg
ggtgtcgagaaattgatcgcgcgtgacgcatgggtcagcatcaaggcgaagcgtgcgggc
atcgtcgaaaaagtcgacgccaaaaacatctatatcatgggcgaagatgaagatggcgcc
tttatcgaccactatgtgctgcagaaaaatatgcgaaccaaccagaacacgacttttacc
caggcaccaatcgtcaaaaaaggcgacaaagtcgatgagggacaggtgatcgcggatggt
ccaaatatggatcagggagaacttgcgatcggtaagaatatcatggtcgcctttatgccg
tggaatggctacaacttcgaggatgcgatcgtcgtcagtgaaaaactgattcgtgaagat
acgttcacatcggtccatatctacgagaaagaggtagaggcgcgtgaactgaaacacggt
gtcgaggagatcacgcgcgatattccgaacgttcgagaagaggatatcggccatctggac
gagagcggtatcgtcaagatcggtacatacatcaagccgggcatgatcatggtcggaaaa
gtttcacccaagggtgaagtgaagccgacgccggaagagcggcttcttcgtgccatcttc
ggcgaaaaagcgggccatgtcgtcaacaaatctctctactgtccgccttcgatggagggt
gttgtcgtcgacgtcaaaatcttcacgaaaaaagggtacgagaaagatcagcgagcgatc
cgtgcctatgaagaggagaaagcggaactcgaccgtgaacatcacgacaagcttctgatg
gtcgaccgcgaagagatgctgcgcatctattcactgctcggcaatgcggttcttgaaagc
gatgtcgagatcgatggcaaaactttcaaagcgggcgaaaaaatcggcaaagaggtgctc
gaaggtgtcaaccgcttcgcgctcaatgcgattgcgaagcacttcagtgaagagattcag
cacaaatacgaagcgctgaagaactacttccagaaagagaaacgaaaacttcgtgacgag
catgaagagaagctgaacatcctcgaaaaagacgacattctgccaaacggtgtcacaaag
cttgtcaaagtttatatcgcgaccaagcgaaagctgaaagtcggtgacaagatggcaggg
cgccacggtaacaaaggtatcgtctccaatatcgttccggagatggatatgccgtatctc
gaagacggaacgccggtcgagatcatcctcaacccgctgggcgttccttcgcgtatgaat
atcgggcagatcctcgaagttcatctcggcctggtcggcaaacgactcgggcagcagatt
caggcgatcttcgacgagaagagagaggacttcgtcaaagagctgcgcaagaagatggaa
gagatcgcggatgtcgcgaaactgatgaacgccaaagagatgctgagtcagctgaacgac
gaagagctgatcaaatatgcacgtgattgggcgaaaggtgtccgtttcgcgacaccggtc
ttcgaaagtgtcgatgccaaagagtttgcgaaactcttcgagatggcgaagatcgacagt
gacggtaagtgtgtcctttacgatggcaagacgggtgagcgcatgaaagagcgtgtcaac
gttggatacatgtacatgctcaaacttcaccacctggtcgatgagaaaatgcacgcccgc
tccaccgggccatacagcctcgttacccagcagccggtcggcggtaaagcgctcttcggc
ggacagcggttcggagagatggaggtctgggcgcttgaagcgtacggtgcggccaatgta
ttgaaagagatgctgacgatcaaatcggatgatgtcgaaggacgtgtacgcgcctacaaa
gcgattacgcgtggcgaaaacgtaccgccggcaggtatccctgaaacactgtttgttctt
accaaagaacttcagtcactcgcacttgatgtagagcttttagatgaggaagaagagaat
gaagaaactggttccaattga
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integrated database retrieval system
