Halomonas cupida: MRB56_01585
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Entry
MRB56_01585 CDS
T11149
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hck Halomonas cupida
Pathway
hck03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MRB56_01585 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hck03021
]
MRB56_01585 (rpoB)
03400 DNA repair and recombination proteins [BR:
hck03400
]
MRB56_01585 (rpoB)
Enzymes [BR:
hck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MRB56_01585 (rpoB)
Transcription machinery [BR:
hck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MRB56_01585 (rpoB)
DNA repair and recombination proteins [BR:
hck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MRB56_01585 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
XNS34794
LinkDB
All DBs
Position
341026..345105
Genome browser
AA seq
1359 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPEERIEAGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLLRALGMSAEEILDEFFDTSVFHIEKSG
FSVELVPSRLRGETATFDIKDGDGNVIVEEGRRITQKHIRQLEKAGLERLEVPMDYLFGK
TLAKDQMNTATGELICPCNTEITPELLETLGQAGITTLETLYTNDLDCGPFVSDTLKLDT
TGSQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFTEDRYDLSGVGRMKFNRRLRRESDT
GSGVLDKGDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DSQVTDEVVHLSAIEEGDFVIAQASATVNEQNQLIDDLVQVRHKGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDAKRIVVRVKEDEIIGGEAGVDIYNLTKYLRSNQNTCQNQRPIVRPGD
SVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGPEEITSDIPNVGESALGKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQMQLDE
VRKDLQETYRIAEDATFERLQRTLSGQPVNGGPQLKKGDVLSDEYLEELPRQQWFKLRMQ
DEAFNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYLAIKRRLQPG
DKMAGRHGNKGVISAIMPIEDMPFDDQGESIDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEHMLRDAREQQVAEIREFLTQVYNSSDGTRVEDLSLLSDDEVIALAKNLKKGVPM
ATPVFDGAREHEIKHLLKLADLPDSGQMTLYDGRTGESFDRPVTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRT
KMYKSIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELEG
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacctgctggccatccagcttgattcctactacgactttctccag
caggatcgttcgcccgaggagcgcatagaagctggcctgcacgccgccttcaaatccgtg
ttcccgatcgagagcttctctggcaacgcagccctcgagtatgtcagctaccgtttcggt
actccggcctttgatgtcaaggagtgccagctgcgtggcgtcacctattccgctcccttg
cgcgtcaaggttcgcctgatcatctacgatcgggactcctcgaacaaggccatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
gttgtcaatggtaccgagcgggtcatcgtgtcccagctccaccgcagcccgggtgtgttc
ttcgaccacgacaagggcaagagtcactcttccggtaagctgctgtactccgcgcgggtg
attccctaccgtggctcctggctcgacttcgagttcgatcccaaggacaacgtcttcgtg
cgtatcgaccgtcgccgcaagctgccggcgagcgtgttgttgcgtgccctcgggatgagc
gccgaggagattctcgacgagttcttcgacaccagtgtgttccacatcgagaagtccggc
ttctctgtggagctggtgccgtctcgcctgcgtggcgaaaccgcgaccttcgacatcaag
gacggtgatggcaatgtcatcgtcgaggaaggtcgccgtattacccagaagcatatccgt
cagctggagaaagccggcctcgagcgcctcgaagtgccgatggactacctgttcggcaag
accctggcgaaggatcagatgaacaccgccactggcgagttgatctgtccgtgcaacacc
gaaatcactccggagttgctggaaaccctcggtcaggcgggtattaccacgctcgagacg
ctgtacaccaacgacctcgattgtggtccgttcgtctccgataccctcaagctggatacc
accggttcccagctcgaggcgctggtcgagatctatcgcatgatgcgccccggcgagccg
cccaccaaggaagctgccgagacgctgttcaacaacctgttcttcaccgaggatcgttac
gatctgtccggtgttggccgcatgaagttcaaccgccgtctgcgtcgagagtccgatacc
ggctccggcgtgctggacaagggggatatcctcgacgtactgcgcgagttgatcaacatc
cgtaacggcttcggcgacgtcgatgacatcgaccacctgggcaaccgtcgtatccgctgt
gtcggtgagatggccgagaaccagttccgtgttggcctggtgcgtgtcgagcgcgcggtc
aaggaacgtctgtccatggccgagagcgaaggcttgatgccgcaggacctgatcaacgcc
aagccggtggctgctgcggtcaaggagttcttcggttcatcccagctgtcgcagttcatg
gaccagaacaacccgctgtccgaggttacccacaagcgtcgtgtgtcggccctcggtccg
ggcggtctgacccgtgagcgggctggcttcgaagtgcgtgacgttcacgccactcactat
ggccgtctgtgcccgatcgagacaccggaaggtccgaacatcggtctgatcaactcgctg
gccacttacagccacaccaacagctatggcttcctcgagacgccgtaccgcaaggtcgtg
gacagccaggtgaccgacgaggtggtccacctgtcggccatcgaggaaggtgacttcgtc
atcgcccaggcatcggccaccgtcaacgaacagaaccagctgatcgacgatctggtgcag
gtacgtcacaagggtgaaaccaccttcatgcgtcccgagcaggtcacgctgatggacgtg
tcaccgcgtcaggtggtgtccgtggcggcagcgttgattccgttcctcgagcacgatgac
gccaaccgcgccctgatgggggcaaacatgcagcgccaggcggtgccgaccctgcgtgcc
gacaagccgctggtgggtaccggcatggagcgctttgtggcgcgtgactccggcgtctgt
gccgtggcgcgtcgtggtggtgtgatcgattcggtcgacgccaagcgtatcgtggtacgt
gtcaaggaagacgagatcatcggcggtgaagccggcgttgatatctacaacctgaccaag
tatctgcgttccaaccagaacacctgtcagaaccagcgcccgatcgtgcgcccgggcgac
agtgtggcgcgtggcgacatcctcgctgatggtccctctgtcgacatgggtgatctggcg
ctgggtcagaacatgcgcatcgccttcatgccgtggaacggctacaacttcgaggattcc
atcctgctgtccgagcgggtggtccaggaagatcgtttcaccactatccacattcaggaa
ctgacctgtgtgtcccgtgacaccaagctgggcccggaagaaattacttccgatattccc
aacgttggtgagtcggcactgggtaagctggatgaagctggtgtggtctacatcggtgcc
gaagtcggtccgggtgacattctggtcggtaaggtcacgcccaagggtgagacccagttg
acgccggaagagaagctgctgcgtgcgatctttggtgagaaggcgtccgacgtcaaggac
acctcgctgcgcgcgccgaccggcatgaagggtactgtcatcgacgtccaggtatttacc
cgtgacggcgtcgagaaggactcgcgtgctctgtccatcgagcagatgcagctcgacgag
gtgcgcaaggacctgcaggaaacctaccgcatcgcggaagacgctaccttcgaacgtctc
cagcgcaccctgtccggccagccggtcaatggtggtccgcagctgaagaagggcgacgtg
ctgtccgacgagtacctcgaggagctgccgcgtcagcagtggttcaagctgcgcatgcag
gacgaggcgttcaacgagctgctggctcaggccgacgagcagctggaaaatcgtcgcaag
gagatggacgagcgtttcgaggacaagaagcgcaagctcactcagggcgacgacctggca
ccgggcgtactcaagatcgtcaaggtctacctggcaatcaagcgtcgtctgcagccgggt
gacaagatggccggccgtcacggtaacaagggtgtcatttccgcgatcatgccgatcgag
gacatgccattcgatgaccagggtgagtccatcgatgtggtactcaacccgctgggcgta
ccgtcgcgcatgaacgttggtcagatcctcgagactcacctcggcatggccgcgcgtggc
ctcggtgtgaagatcgagcacatgctgcgtgatgcacgcgaacagcaggtggccgagatt
cgtgagttcctgacccaggtgtacaactccagcgatggaacccgagtcgaggatctgtcg
ctgttgagcgatgacgaagtcatcgcgctggcgaagaacctcaagaagggcgtaccgatg
gcaacgccggtgttcgacggtgctcgtgagcatgagatcaagcacctgctgaagttggct
gatctgccggattccggccagatgacgctctatgatggtcgtaccggtgagtccttcgac
cgcccggtgacggtgggctacatgtatatgttgaagctcaaccacctggtcgatgacaag
atgcacgcgcgttccaccggctcctactcgcttgttactcagcagccgctgggtggtaag
gcgcagttcggtggtcagcgctttggtgagatggaggtctgggccctggaggcctatggc
gccgcttacactctgcaggaaatgctcacggtcaagtccgatgacgtggagggtcgtacc
aagatgtacaagagcatcgtggatggcgaccacaccatgcaggcgggcatgccggaatcc
ttcaacgtattggtgaaggaaatccgctcgctgggcatcgatatcgaactggagggttga
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integrated database retrieval system
