Helicobacter cholecystus: NCTC13205_00718
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Entry
NCTC13205_00718 CDS
T06600
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
hcl
Helicobacter cholecystus
Pathway
hcl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC13205_00718 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcl03021
]
NCTC13205_00718 (rpoD)
Transcription machinery [BR:
hcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC13205_00718 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
VEJ24575
UniProt:
A0A3D8IVT4
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All DBs
Position
1:769794..771659
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AA seq
621 aa
AA seq
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MENETQQIQKTKKDPIKELELLFSEEETPYISYEKIAQTLQKAPNATQVKKVKELAKKYT
KQLMSSSEVAKLLNIQDKTKLIEEKKKVLDGELEDEFDFMKERELLEWSRSDSPVRMYLR
EMGQIPLLTKEEEVILSKQIELGEDTILDAICSVPYLIDFIHDYRDALINRERRVKELFR
NFDDDREDEGGEDEGIEEESEEVNRPMSKKDQKRIDNVLASFKNLEKAKKDWLKVLESKP
NPEDDELGHILLLAHKKHILKESLLELGPTSKLISELVKAMENTLKSGGGFEKELKRLEY
KLPLFNDTMVANHKKILENITNMSREEILEVVPESTMVGVYMELKKLFQTKEASEGGFDL
DPEKLKEILEQIKRGKNISDKAKGKMARSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLM
KAVDKFEYKKGFKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHIQE
YGKEPDVEFIAQEVGLSVDKVKNVIKITKEPISLEAPIGSDEDGKFGDFVEDKNAIGPMD
HILKEDLRGQIELILDQLNDREQAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIES
SAIKKLKHPKVGRQLKNYMEE
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaactcagcaaattcaaaaaacaaaaaaagatccaatcaaagaattagaa
ttactttttagcgaagaagaaaccccttatatttcttatgaaaaaattgcccaaaccttg
caaaaagcgcccaatgcaacacaggtaaaaaaagttaaagaacttgctaaaaaatataca
aaacaattaatgagctcttcagaggtagcaaaactcctcaatatccaagataaaacaaag
cttatagaagaaaagaaaaaagttcttgatggtgaactagaagatgaatttgattttatg
aaagaaagagagcttttagagtggagcaggagtgatagtcctgttagaatgtatttacgt
gaaatgggccagattcctcttcttacaaaagaagaggaagtcatcttaagcaaacaaatt
gagcttggggaagatacgattttggatgcgatttgctccgttccttatttaattgatttt
attcatgattatcgagatgcactcattaatcgagagcgaagagtaaaagagctatttaga
aattttgatgatgatagagaggatgaggggggagaagatgagggcattgaggaagaaagc
gaagaagtaaatagacctatgagcaaaaaggatcaaaaacgcattgacaatgttcttgca
agttttaaaaatcttgaaaaagccaaaaaagattggcttaaagtcttagaatccaaacca
aatccagaagatgatgagctaggacatattcttcttcttgcccacaaaaagcacattctt
aaagaaagcctcttggagctaggaccaacaagtaagcttattagtgaacttgttaaggct
atggaaaatactcttaagagtggaggtggatttgaaaaagagcttaaacgtcttgaatat
aaactccccttgtttaatgacacaatggttgcaaatcataaaaaaattcttgagaatatt
acaaatatgtctagagaggagattttagaggttgtgccagagagtacaatggttggtgta
tacatggaacttaaaaagctctttcaaaccaaagaagcaagtgaagggggatttgatcta
gatcctgagaaacttaaagaaatcctagagcaaatcaaaagaggaaaaaatatctctgat
aaagcaaaagggaaaatggcacgctctaaccttaggcttgtagtttccattgctaagcgc
tacactaatagggggctcccctttcttgacctcatccaagaaggaaatattggtctcatg
aaagctgtagataagtttgaatacaaaaaaggatttaaattctcaacatatgcaacttgg
tggattcgacaagctatctcacgtgctattgccgatcaagcaagaacaattagaatcccc
atccatatgattgaaaccatcaatagaattcataaaattatgcgtaaacatatccaagaa
tatggaaaagagcctgatgttgaatttattgcacaagaagtaggattgagtgttgataag
gttaaaaatgtaattaagatcacaaaagaacccatcagtcttgaagctccaattggaagc
gatgaggatggaaaatttggagattttgttgaggataaaaatgctattggtccaatggat
catatccttaaagaagatttaagagggcaaattgagctgatcttagatcaactcaatgat
agggaacaagcagtcattcgcatgagatttggtctacttgatgatgagagtgatagaact
ctagaggaaattggtaaagagcttaatgttacaagagagcgtgtgagacaaatcgaatct
agtgcaattaaaaaacttaaacaccctaaagtaggccgccaactcaaaaattatatggaa
gagtaa
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