Helicobacter cholecystus: NCTC13205_00938
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Entry
NCTC13205_00938 CDS
T06600
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hcl
Helicobacter cholecystus
Pathway
hcl03030
DNA replication
hcl03430
Mismatch repair
hcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13205_00938 (dnaE)
03430 Mismatch repair
NCTC13205_00938 (dnaE)
03440 Homologous recombination
NCTC13205_00938 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcl03032
]
NCTC13205_00938 (dnaE)
03400 DNA repair and recombination proteins [BR:
hcl03400
]
NCTC13205_00938 (dnaE)
Enzymes [BR:
hcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC13205_00938 (dnaE)
DNA replication proteins [BR:
hcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC13205_00938 (dnaE)
DNA repair and recombination proteins [BR:
hcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC13205_00938 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
HHH_3
Motif
Other DBs
NCBI-ProteinID:
VEJ24777
UniProt:
A0A3D8IXR1
LinkDB
All DBs
Position
1:complement(987305..990934)
Genome browser
AA seq
1209 aa
AA seq
DB search
MKFTHLHLHTEYSLLDGANKIKLLAKKLKELGMDSVAMTDHGNMYGAMEFYTVMLENGIK
PIIGMEAYIHNQEDISDKSIKQRYHLCLYAKDLEGYHNLLALSSQAFINGFYYYPRINKK
LLREHSKGLVCSSACLAGEVSYHLNSTNPKRLDAGAKKNRPYNAYGYAFAKEAALEYQDI
FGDDFYLEIMRHGIQEQEHIDNLLIKLSLETGIKIIATNDSHYLTQDDAKTQEVAMCVAM
GKILNDKDRLKHSVNEFYIKSPQEMAVLFADIPEALANTQEIVEKCNLTLPLKNTEIVNK
ESGEKILNFTPATPPSFRFTAQYAKNEGLDFSDDANYFAYKCREGLKERLKLVPQEKHSL
YEERLNQEIEIITKMNFPGYMLIVWDFVNFAKKNGIPVGPGRGSAAGSLVAFCLKITNID
PIKYDLLFERFLNPERVSMPDIDMDFCQRRRGEIIEYVSNLYGKYNVAQVVTFGELKAKG
VIRDVARVLDMPLKNADAMAKLVPEELKITLQDAYEKEPKLREMIESDSLAKEVWEYSLK
LENFKRNTGVHAAAIVIDSERELWYKTPLAVAKNGGSVTQYSMKWLEPVDLIKFDFLGLK
TLTVIDDALKLIKKRYGEEIDFLSVNIEDPKVYETMQSGNTLGLFQIESGGMQDLNKRLK
PSTFEDVIAVLALYRPGPMESGMLDDFIDRKHGLKPIEYMFPELEPILKPTYGVIVYQEQ
VMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKDSFVKGAINNGFDGEKGGELWDLIV
KFAGYGFNKSHSAAYAMVTFQTAYLKTYYEHEFMAAMLTSETSKVEAVAKYIDEVTAMGI
KILPPHVNLSENDFGVNGEGEHKAIVFGLSAIKGVGEAPIENIVNERMKNGEFKSLEDFV
GRVDWSKISKRVLEPLIKSGSLDNLGYSRACMLEHLDEICETGRNNNRLSQSLEASLFAG
FEDELSSEVKFNFIDTHTSVDESASLEGEYECLGLYISGHPLDAYKAQIDEIKGIGKSVE
IPEYKDGESLLLVGKVIECVRRISKKSGNPYGSIEILDRWGKVTFMLFSQLFEAFEKMDY
NKEPLVFKCSIETREGKNQLAIKEILSLEEAKEVKISKPKKQKLQASKETPQSILASTHE
PTCPLAIIISSKSDKNFIKSIAQEVKKYQGERELKIIVEEDNQSYLFSSNLKVSTEARRK
LSQLQWVDL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacacatttacacttgcatactgaatactcactccttgatggtgcaaataag
attaagcttcttgctaagaagcttaaagaattaggcatggatagtgttgcaatgaccgat
catggcaatatgtatggagctatggagttttatacggtaatgctagagaatggcatcaaa
cctatcatcggaatggaggcctatattcacaatcaagaagatatcagtgacaaatcaatc
aaacagcgatatcacctttgtttgtatgctaaagaccttgaggggtatcataatcttcta
gccctaagttcacaggcttttatcaatggtttttattattatccaagaattaataaaaaa
cttctaagagagcatagtaagggacttgtatgctcttcagcttgtttggcaggtgaggtg
agttatcatcttaatagcaccaaccctaagcgattagatgcaggtgcaaaaaagaatcgc
ccttacaatgcctatggatatgcatttgctaaagaagcagcattggagtatcaagatatt
tttggtgatgatttttatttagagattatgcgtcacggaatccaagaacaagaacatatt
gataatcttctgattaagctctcacttgaaacagggattaaaatcattgcaacaaatgat
tcacactatctcacccaagatgatgcaaaaacccaagaagtagcaatgtgtgtagctatg
ggaaaaattcttaatgacaaagatcgcttaaaacattcagtcaatgagttttatattaaa
tccccacaggaaatggcagttttgtttgcagatattcctgaagctcttgcaaatactcaa
gagattgtagagaaatgtaatctcactctccccttaaaaaatactgagattgtcaataag
gagagtggagagaagattttaaatttcacccctgctactcctccttcatttcgatttaca
gctcaatacgctaaaaatgagggtttggattttagtgatgatgcaaattattttgcttat
aagtgtagagagggattaaaagaaagattaaaacttgtaccccaagagaaacatagtctt
tatgaagaaagacttaatcaagaaatagaaattatcactaaaatgaattttccaggctat
atgcttattgtttgggattttgtgaattttgctaaaaaaaatggaatccctgttggtcct
ggaagggggagtgcagcgggaagtttggtggcattttgtttaaaaattacaaatatcgat
cccatcaaatatgatcttctttttgagaggtttttaaatcctgaacgtgtcagtatgccc
gatattgatatggatttttgtcaaagaagaaggggggagattattgagtatgtgagtaat
ctttatggcaaatataatgttgctcaagtcgttacctttggtgagcttaaagccaagggg
gtgattagagatgttgcaagagttttggatatgccacttaaaaatgcagatgcgatggca
aaacttgttcctgaagagcttaaaatcacgctccaagatgcttatgaaaaagaaccaaaa
cttagggaaatgatagaaagcgattctcttgcaaaagaggtatgggaatattcacttaag
cttgaaaactttaagcgaaatactggggtgcatgcagcagcaattgtcattgatagtgaa
agagagctttggtataaaacgcctttagctgtggcaaaaaatgggggaagtgttacccag
tattctatgaaatggctagaacctgtggatttaattaaatttgacttcttgggactaaaa
actttaaccgtgattgatgatgcgcttaagcttattaaaaagcgttatggagaggagatt
gactttttaagtgtcaatatagaagatcctaaggtatatgagacaatgcaaagtggaaat
actttagggctattccaaattgaatcagggggaatgcaagatcttaacaagcgtttaaag
ccaagcacatttgaagatgtgattgcggttttagcactctatcgcccaggtccaatggaa
tcaggaatgcttgatgattttattgatagaaagcatggattaaagcctattgaatatatg
tttcccgagcttgagccaattcttaagcctacctatggtgtgattgtctatcaggagcag
gtaatgcaaattgttcaaactattggcggtttttcactgggtggagcagatttggtacga
agagcaatggggaaaaagatcaaagaagagatggatcgccttaaagatagttttgtcaaa
ggggcgatcaataatggttttgatggagaaaaaggaggagaactatgggatcttattgtt
aagtttgcaggatatggatttaataaatctcactctgcagcttatgctatggttactttt
caaacagcctatcttaaaacttattatgaacatgagtttatggcagcaatgcttacaagc
gagacaagtaaagttgaagctgttgctaaatatattgatgaagttacagcaatgggaata
aaaatcttaccccctcatgtcaatctttcagaaaatgattttggtgtgaatggagaaggt
gaacacaaagcaattgtctttggtttgagtgcaattaaaggagttggagaagctccaatt
gaaaatattgtcaatgagagaatgaaaaatggtgaatttaagagtttggaagattttgta
gggagagtagattggagtaaaatctctaagcgtgtattagaaccattaattaaatcagga
agtttggacaatcttggatacagtcgtgcatgtatgttagagcatcttgatgagatttgt
gagactggacgtaacaataatcgactttctcaatctttagaagcttcattatttgcagga
tttgaagatgagctctctagtgaagtgaagtttaattttattgatacacatacttcagta
gatgagagcgcatctttagaaggagaatatgaatgtttggggctttatatttctggacat
ccgcttgatgcttataaggcacaaattgatgagattaaagggattggaaagagtgtggaa
attccagaatataaagatggagaaagtttgttgcttgtaggaaaagtgattgaatgcgtc
agaagaatcagtaaaaagagtggaaatccttatggaagtattgagattttggatcgttgg
gggaaagtcacttttatgcttttctcccaactttttgaagcttttgaaaagatggattac
aataaagagcccttagtgtttaaatgcagtattgaaacaagagagggcaagaatcaactt
gccattaaagagattcttagccttgaagaagccaaagaagtcaaaatctcaaaacctaaa
aaacaaaaattacaagcctctaaagaaactcctcaaagtatattggcaagcactcatgag
cctacctgtcctcttgcaattatcatctcttcaaagagcgataagaatttcattaaaagt
attgcccaagaggtgaaaaaatatcaaggagaacgtgagttaaaaattattgttgaagaa
gataatcaaagctatcttttttcttcaaacctaaaagtgagcactgaggctagaagaaag
ctctcacaactccaatgggtagatctatga
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