Helicobacter cetorum MIT 99-5656: HCD_06125
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Entry
HCD_06125 CDS
T02033
Symbol
fliA
Name
(GenBank) flagellar biosynthesis sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
hcm
Helicobacter cetorum MIT 99-5656
Pathway
hcm02020
Two-component system
hcm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HCD_06125 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCD_06125 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcm03021
]
HCD_06125 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
hcm02035
]
HCD_06125 (fliA)
Transcription machinery [BR:
hcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCD_06125 (fliA)
Bacterial motility proteins [BR:
hcm02035
]
Flagellar system
Flagellar assembly proteins
Stator
HCD_06125 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
UPF0122
Sigma70_r3
DUF3209
KORA
MarR
MarR_2
TetR_C_44
Sigma70_ECF
HTH_10
DUF4202
DUF1492
Motif
Other DBs
NCBI-ProteinID:
AFI06227
UniProt:
I0ETF8
LinkDB
All DBs
Position
complement(1308582..1309343)
Genome browser
AA seq
253 aa
AA seq
DB search
MILMMDNEMQHLQETPKEKSVEKVLNAYDKQQHHNQDALAVQYLPAVRAMAFRLKERLPS
SIDFNDLVSVGTEELIKLARRYESALNDSFWGYAKTRVNGAMLDYLRSLDVISRSSRKLI
KNIDNETTKYLNEHGKEPSDEYLAQVLGESIEKIREAKVASDIYALVPIDEQFNAIEQDQ
ITKKIEVEELLEHVQKVLSQMSEREQTLIQLYYFEELNLSEIKEILGITESRISQIIKEV
IKKVRKSLGASHG
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgattttgatgatggacaatgaaatgcaacatttacaagagactcctaaggaaaaaagc
gtagaaaaagttttgaacgcctatgataagcaacaacaccacaatcaagatgcactagct
gttcagtatttaccagcggtgcgtgctatggcgtttcgcttgaaagagcgcttgcctagt
tctattgattttaacgacctagtctctgtcggcactgaagaattaattaaattagctagg
cgttatgagagtgcgttaaacgactctttttgggggtatgcaaaaactcgtgtcaatgga
gcgatgttagattatttacgctctttagatgtgatttctcgctctagtaggaaattgatt
aaaaatattgataatgagacaaccaagtatcttaatgagcatggaaaagagcctagtgat
gagtatttagcacaggttttgggtgaaagcattgaaaaaattagagaagctaaagtagct
tctgatatttacgctttagtgcctatagatgagcaatttaatgcgattgagcaagaccaa
atcactaaaaaaattgaagtagaagagttgttagagcatgtccaaaaagtgttgagtcaa
atgagtgagcgagagcaaacccttatccagctctattactttgaagagttgaatttgagt
gagattaaagagattttaggtattacagaatcacgcatttctcaaattatcaaagaagtg
attaaaaaagtgcgtaaatccttaggagcaagccatggctga
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