Halomonas chromatireducens: LOKO_02966
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Entry
LOKO_02966 CDS
T04292
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03030
DNA replication
hco03430
Mismatch repair
hco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOKO_02966 (dnaE)
03430 Mismatch repair
LOKO_02966 (dnaE)
03440 Homologous recombination
LOKO_02966 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hco03032
]
LOKO_02966 (dnaE)
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_02966 (dnaE)
Enzymes [BR:
hco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOKO_02966 (dnaE)
DNA replication proteins [BR:
hco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOKO_02966 (dnaE)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOKO_02966 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AMD02014
UniProt:
A0A120JWI6
LinkDB
All DBs
Position
complement(3158599..3162099)
Genome browser
AA seq
1166 aa
AA seq
DB search
MTTPFVHLRVHTEYSLVDGLVRLKPLIKATAERGMPALAVTDEANLFGLVKFYRGAQGAG
LKPIIGADLWLANPFDEGHPYRLTLLAMNDIGYRNLTELISRGWMEGQRQGRALLDRAWV
LEQSEGLIALSGARDGEIGRHLLSDHRDEARALLDEWNAAFPGRFYLELVRTGRPLEEEC
VHLSVALAMETGTPVVATNDVRFLERDDFWAHETRVSIGEGRALDDKRRERRYTEEQYLK
SPEEMADLFSDIPAALENSLMIAARCSVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHDGL
TERLDFLFPAERYPRDGAEYAEIDARYRKRLDFELDIIIQMGFPGYFLIVMDFIQWAKDN
NVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IEYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEAEPALKEFIDNDDEAQEIWEMAIKLEGITRGTGKHAGGVVIAPTKLTDFAPLLCDEEG
AGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRAAAGQGPLNIDTIPLDDA
PTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDDFINR
KHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCAANGIDKELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL
KSHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLGLTVTPPDVNGGGYKFTVDIEARVVYG
LGAIRGVGEGPIGAIVEAREADGPFTDLFDFCRRVDPRRMNKRTLEALIRSGALDNLGPN
RAVLSAAMEAALKAAAQTQANQNLGMIDMFGEAFADESEVDPYEAYRQTREWTDKERLAG
EKETLGLYLTGHPIDEYEQELKRFVSTRISDLKPSREPQRVAGLVVGVRTMKSKRGDTMA
FLTLDDRTGRIEASLFGEMFEALRGQLDTEQVLIVEGEVSSDDYSGGLRLRGKEITPMVA
ARSRYGEAVELSLDGDRVNGRLVDNLRDSLSPYCDASGLPVRLRYRNGEAVGWLELDEQW
RVAPCDELLIALREVQGQDGVRLKYR
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcccttcgtacatcttcgcgttcacaccgagtactcgctggtcgacggcctg
gtgcgtctcaagccgctgatcaaggccacggccgagcggggcatgccggccctggccgtc
acagatgaggccaacctgttcggactggtcaagttctaccgtggtgcccagggtgccggg
ctcaagccgatcatcggcgccgacctgtggctggccaaccccttcgacgagggccacccc
taccgcctgaccctgctggccatgaacgatatcggctaccgaaacctaaccgagctgata
tcccgtggctggatggaggggcagcggcagggccgggcgctgctcgatcgcgcctgggtg
ctcgagcagagcgaggggcttatcgccctgtccggcgcccgcgacggtgagatcggccgt
catctgctctccgaccaccgggacgaagcccgggcgctgctggacgagtggaacgccgcc
ttcccggggcgcttctatctggagctggtgcgtaccggccggccgctggaggaggagtgc
gtgcatctgtcggtggcgctggccatggagacaggtacgccggtggtggccaccaacgac
gtgcgtttcctcgagcgcgacgacttctgggcccacgagacccgagtctccatcggtgag
ggccgtgcgctcgacgacaagcgacgcgagcggcgctacaccgaggagcagtacctaaag
agccccgaagagatggccgatctcttctcggatatccccgccgcgctcgagaacagcctg
atgatcgccgcgcgctgcagcgttgacgtgcggctgggcgagatattcctgcccgaattc
gagattcccgagggcatgacccaggacgagttcttccgcaaggtctcccacgatggcctg
accgagcgactcgacttcctgttcccggccgagcgctacccgcgggacggggcggagtat
gccgagatcgacgcccgctaccgcaagcgcctggatttcgagctcgatatcatcatccag
atgggttttcccggctacttcctgatcgtgatggacttcatccagtgggccaaggacaac
aatgtcccggtggggccggggcgtggctccggtgccggctcgctggtggcctacgcccag
aagatcaccgacctcgacccgctggagtatgacctgctgttcgagcgcttcctcaacccc
gagcgggtctcgatgcccgacttcgacgtcgacttctgcatggagaagcgcgaccgggtc
atcgagtacgtggccgaccgctacgggcgcaacgccgtgtcccagatcgtcaccttcggc
accatggccgccaaggcggtggtgcgcgacgtagcccgggcccagggccggccctattcg
ctcggcgacaagctctccaagctgattcccttcgaggtcggcatgaccctggccaaggcc
atcgaggccgagccggcgctcaaggagttcatcgacaacgacgacgaggcccaggaaatc
tgggagatggcgatcaagctggagggcatcacccgcggcaccggcaagcacgccggcggc
gtggtgatcgcccccaccaagcttaccgacttcgcaccgctgctgtgcgacgaggagggc
gcaggcctggtcgtgcagttcgacaagaacgacatcgaggaggccgggctggtcaagttc
gacttcctcggcctgcggaccctgaccatcatcgactgggcgctggagatggtcgacaag
gtgcgtgcggcggccggccagggaccgctcaacatcgacaccatcccgctggatgacgcc
cccaccttcgagatgctcaagcgcgccgagaccacggcggtgttccagctcgaatcccgc
ggcatgaaggaactcatcaagcgcctgctgccggactcgctggaggacatgatcgccctg
gtggcgctgttccgccccggccccctgcagtcgggcatggtcgacgacttcatcaaccgc
aagcacggccgcgccgagatctcctacccccacccggactaccagcacgaactgctcaag
ccggtgctcgagcccacctacggcatcatcctctaccaggagcaggtgatgcagatcgcc
caggtgctggcagggtacagcctgggacaggccgacatgctgcgccgggccatgggcaag
aagaagccggaggagatggccaagcagcgtgccggcttcatggagggctgtgccgccaac
ggcatcgacaaggagctcgcgggcaatatcttcgatctggtggagaaattcgccggctac
ggcttcaacaagtcgcactcggcggcctacggcctggtctcctaccagaccgcctggctc
aagtcgcactaccccggccccttcatggcggcggtgatgtccaccgagatggacaacctc
gacaaggtggtgccgctgatcgaggagtgtcgccacctggggctgaccgtgaccccgccg
gacgtcaacggcggcggctacaagttcaccgtcgatatcgaggcgcgggtggtctacggc
ctgggcgccatccgcggcgtgggcgaagggcccatcggtgccatcgtcgaggcgcgtgaa
gccgatgggccattcaccgatctgttcgacttctgccgccgggtcgacccccggcgcatg
aacaagcgtaccctggaggcgctgatccgctccggggcgctggacaacctcggccccaac
cgcgcggtgctcagcgcggcgatggaagccgcgctcaaggccgcggcccagacccaggcc
aaccagaacctgggcatgatcgacatgttcggcgaggccttcgccgacgagtctgaggtg
gatccctacgaggcctatcgacagacccgcgagtggaccgacaaggagcgcctggccggc
gagaaggagacgctggggctctacctcacgggtcaccccatcgacgagtacgaacaggag
ctcaagcgcttcgtctcgacgcgtatcagtgacctcaagccttcccgtgagccgcagcgg
gtcgccggcctggtggtgggggtgcgtaccatgaagtccaagcgcggcgataccatggcc
ttcctgacgcttgatgaccgtaccgggcgcatcgaggcctcgctgtttggcgagatgttc
gaggcgctgcgtggccagctcgacaccgagcaggtattgattgtcgagggggaggtctcc
agcgacgactactccggcgggctgcgcctgcgcggcaaggagattacccccatggtggcg
gcgcgcagccgctacggcgaggccgtggagctctcgctggacggcgaccgggtcaacggg
cggctggtcgacaacctccgcgacagcctctcgccctactgcgacgcgagcgggctgccg
gtccggctgcgttatcgcaacggcgaggcggtcggctggctggagctggacgagcagtgg
cgggtagcgccctgcgacgagctgctgatcgcgctgcgcgaggtgcaagggcaggacggc
gtgcggctgaagtatcgctag
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