Helicobacter cinaedi PAGU611: HCN_0991
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Entry
HCN_0991 CDS
T02034
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCN_0991 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcp03019
]
HCN_0991 (deaD)
03009 Ribosome biogenesis [BR:
hcp03009
]
HCN_0991 (deaD)
Messenger RNA biogenesis [BR:
hcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCN_0991 (deaD)
Ribosome biogenesis [BR:
hcp03009
]
Prokaryotic type
rRNA helicases
HCN_0991 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Shikimate_DH
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BAM12226
UniProt:
A0A809NLN5
LinkDB
All DBs
Position
complement(1012395..1013936)
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AA seq
513 aa
AA seq
DB search
MTQDSQTPTQESPAQNEQSFETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIA
QAQTGTGKTAAFSIPILNALSRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMY
GGQSIKRQCDLLEKKPKVMIATPGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDI
EEIFKFLPNTHQTLLFSATMPEPIKNLALKILDKPEFVKITPTDITNKDIEQQYYIINEG
ERDEAIVRLLETQNPTKSIIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKA
FKENEIELLVATDVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAITLAT
PLEYKDLSKIKQITKAKLTLCEITQEYSDDAFSQEISHAKVNDKSVAIYEKLKDKVDTTQ
LCLKLIALHLEKSKQNKIGLSKEQIAQLESQSESKEQKHNKKSSKFSHNAKSKPQSQRNN
SRGNGRDMGGNKRGRKRYDDVDKSQPYTGSIWG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagattcacaaacacccactcaagaatctccagcccaaaacgaacaaagcttt
gaaacatttggcttaaaagattttgtgttaaagggcattaaagaagcgggatttagctct
cctagccccgttcaagctcaaagtatccctattgttttacaaggcaaagacttaatcgct
caagctcaaacaggcacgggcaaaacggctgcctttagtatccccattttaaatgccctt
agtcgcaacaaagagattgaagcccttgtgattacacccacacgagaacttgctatgcaa
attagcgaagaggtgctaaagcttgggcgatttgggcgtattaaaaccatttgtatgtat
ggggggcagagtatcaagcggcaatgtgatttgttagagaaaaagccaaaggtgatgata
gctacaccgggcagattgcttgatcacttgcaaaatggcaggatagagaatttcgctcca
aaggtagtagtgcttgatgaatctgatgaaatgcttgatatgggctttttagatgatatt
gaagagatttttaagtttttgccaaatacgcaccaaaccttgctcttttccgccacaatg
ccagagcctatcaagaatctagccttgaagattctagataagccggagtttgtaaaaatc
actcccacagatattacaaataaagacatagaacagcaatactacattatcaatgaaggg
gagcgagatgaagcgattgtgcggctacttgagacgcaaaatcccacaaaaagcattatt
ttcacacgcaccaaaaaagaagccgatgcattggcgacaaggcttgttacaaagggattc
aaggctatggcactgcacggcgatatggagcagtgggatagacgcacagccattaaggcg
tttaaggaaaatgagattgaactgcttgtggcaactgatgtggcttcgcgtgggcttgat
attagcgatgtgagtcatgtgtttaactatcacataccgctgaatcctgaaagctatgtg
catcgcatagggcgaacaggcagggcagggaaaaagggtgtggctatcacccttgccaca
ccgcttgaatataaagatttaagcaagattaaacagattacaaaagcaaagctcacattg
tgtgagattacgcaggaatacagcgatgatgcgttttcacaagagatttcccacgctaag
gttaatgataaatctgtggcgatttatgaaaagcttaaagataaggttgatacaacacaa
ctttgccttaagctcattgccttgcatttggaaaaaagtaagcaaaataagattgggcta
agtaaagagcaaatcgcccagcttgaatcccaatccgaatctaaagagcaaaaacacaat
aaaaaatctagcaaattttcacacaatgcaaagtctaagccacaatctcaaagaaacaat
agcaggggtaatggtagagatatgggcggaaataaaagaggcagaaagcgttatgatgat
gtggataaaagtcagccatacacaggaagcatttgggggtag
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