Hippocampus comes (tiger tail seahorse): 109531112
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Entry
109531112 CDS
T04969
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109531112 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109531112 (cnot1)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109531112 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109531112 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
109531112
NCBI-ProteinID:
XP_019750772
LinkDB
All DBs
Position
Unknown
AA seq
2393 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNTDLRGFAAQFIKQKLPDLLRSYIDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDSSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFLIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FAEYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVMALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSSQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSQDAISPVQTDPLTGMGSL
NLGGTASSHTQSMQGFPTSLSSAFNNPQSPAKAFPPLSNTNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGTGIGSSLGMPAVSTDPFSTRKMSTPSLNPSTFQQSKMKASDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQTQQPGVPKAPQPGQTSTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSL
EEQLSAPKKEAKPPDEMLPVSTSGDFVPFSAPPSTPAATTAPCTTTGPPTPQFSYHDINV
YALAGLAPHININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQII
RKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLVSIAANLKNSFAAALRAPTPQQ
REMMEEAAARVSQENCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPV
VLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAW
ATDDVAQIYDKCMADLEQHLHAIPQALSMNPLTQALRSLLEAVALARNSRDGIAALGLLQ
KAVEGLLDATSGADNDLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKY
NVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEAD
LLHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYD
DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT
EMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKINLL
NKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTF
HILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVE
LNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLP
DPFTPNLKVDMLSEINIAPRILTNFTAVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVS
NEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaatttg
acaaagaaaaactacagagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtcttttctcacatgtggattttagtggcgat
ggtaaaagcagcggcaaggattttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagcccaactttatctcgactctgtgctacgccatcgacaatcccctgcac
taccaaaagagtttgaaaccatctacccacttattcactcaactgagtaaagttcttaag
ctcagcaaggttcaagaggtgatatttggccttgcactgctcaactcctgcaacactgac
ctccggggatttgctgcacagttcataaagcagaagcttcccgacctcttgcgatcatac
attgacgcagatctcggcggaaatcaagaaggtggcttccaggacatcgctatagaggtc
ttgcacctgctgctctcccatttattgtttggccagaagggagccagtggggtcggacag
gagcagattgacgccttcttgaagacactttgccgagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgttgtaccctgaaaaacgggacattctcatggataggatcctg
cctgactccggggagttagccaagaccataatggagagttctcttgcagaattcatgcag
gaagtaggctacggcttctgtgccagtctggacgagtgcagaaacataatcctccagtat
ggggtgagggaggtgacagccagccaggtagccagggtcctgggcatgatggctcgtacc
cactctggcctaactgatggtatccccctacagtcaatctctgcacctggaagtggcatc
tggagtgacgggaaggataagaatgacagctcacaagcacacacgtggaatgttgaggtg
ctcatcgatgtggttaaggaagtgaatccaaacctgaacttcaaagaggtgacatacgaa
ctggatcatgcaggattcctaatccgggacagtaagggcctgcatatagtggtgtatggc
attcagcggggtttgggcatggaggtctttcctgttgatctcatatatcggccatggaaa
cacgcagaaggacagttatcattcattcagcactctcttatgagccctgaagtgttctgc
ttcgctgagtacccttgccacacagtagcaatcgacatcctaaaagcaccaccggaggat
gacaacagggagattgcaacatggaaaagtctggatttggtggaaagcctgttgaggcta
tcagaggttggccagtacgagcaggtgaagcaactcttcagcttccccatcaagcactgc
ccggatatgcttgttatggcattgctgcagatctccacctcttggcatacactacgccac
gagctcatctctaccctgatgccaatctttctgggcaaccaccctaactctgctatcatc
ctgcactatgcctggcatggacagggacagtctccttccatccgtcagttaattatgcat
tcaatggctgagtggtatatgagaggtgagcagtatgaccaagccaagttgtctcgcatc
ctggatgtggcccaagacttgaagtctctctcgatgctgctgaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaattagagagcacggggaaccttttatccaagcttgcgtcacattcctt
aagaggcgatgcccatccattatggggggtttggccccagacaaggaccagcctaaaagt
tctcagttgcctccagagaccttagccaccatgctggcctgtcttcagtcatgtgctggg
agtgtttcgcaagaactttcggagacaatcctgaccatggttgccaactgcagcaacgtg
atgaacaaagcccggcagccaccacctggagtcatgcctaaaggtcgggccccgagcacc
agcagccaggatgccatttcccctgttcagacggaccctcttactggcatgggctccttg
aacctgggcggcacagccagctcccacactcagagcatgcaaggtttccccacctcgctt
agttcagctttcaacaatccccagtcgccagcaaaggcattcccacctctttcaaacacc
aatccaagcacaccatttggcggtattggcagcttgtcctcgcagctccctggtatggac
tctggtcccttaggctcagggatcggcactggtatcggttctagtcttggaatgccagca
gtaagcactgatccattcagcaccagaaagatgagcacaccgagcctgaacccatctacc
ttccagcagagtaagatgaaggcctctgacctttctcaggtttggcccgaggcaaaccag
cactttagcaaggagatagatgatgaagcaaacagttacttccagcgcatctacaaccac
ccacctcacccaacgatgtctgttgatgaagttctagagatgctgcagcggttcaaagat
tccaccatcaagagggaacgggaagtgttcaattgtatgcttcggaacttgtttgaggag
taccgcttcttcccccaatatccagacaaggagttgcacatcacagcctgcctgtttggt
ggcatcattgaaaagggtcttgtcacctacatggctctcgggcttgcactcagatatgtg
cttgaagccttaagaaaaccttatggatccaaaatgtattactttggaattgctgcccta
gaccgattcaaaaacagattgaaggactacccccagtattgtcaacatcttgcatcaatt
ggtcattttttgcagttcccccaccatttacaagagtgtgtgcagtatattgagtatggc
caacagtcacgggaccccccggtgaagatgcaaggctccatcaccaccccagggagtctg
gcgctggcacaggttcaagcccaaacacagcagcccggtgttccaaaagcaccacaaccg
gggcagacgagtacccttgtcacgaccactacgaccacaaccacggccgcgaagaccacg
accatcacaaggccaacacccagcagcttcaagaaggatgtgcctccctccataaacact
acaaatattgacactctactggtggccactgaccaaacggaaaggattgtagaacccccg
gagaatgtccaggagaagattgctttcatcttcaataacctttctcagtcaaacatgaca
caaaaggtcgaggagttgaaagagactgtgaaggaagagttcatgccgtgggtgtctcaa
tatctggtgatgaagcgtgtcagcattgagcccaatttccatagtctctactccaatttt
ctggacacactcaagaatcccgagtttgtcaaaatggtcctcacagagacgtacaggaac
atcaaggttttgttgacatctgacaaggctgctgccaatttctctgatcgatcattgctg
aagaacctgggtcactggctgggcatgattacactggccaaaaacaagccgattctctac
acagatctcgaaataaagtcgctgctactggaagcttatgtgaaaggccaacaggagcta
ctttatgtggttccctttgtggccaaagttttggagtccagcctacgaagcatggttttc
aggccccagaatccttggaccatggccatcatgaatgttctcgcagagctacatcaggaa
catgacctcaagcttaacctgaaatttgagattgaagttctttgtaagaacttgtctctg
gacatcaatgacctgaagccggggaacctgttgaaggacaaagacaaacttaagagtctt
gaggagcagctgtcggcaccaaagaaagaagcaaagcctccggacgaaatgctcccagtt
tccacatcaggagactttgttccgttttcagcgccgccctccactccagctgccaccact
gctccttgcacaaccacggggccccccaccccacagttcagttatcacgacatcaatgtg
tatgccctggcaggcctggcaccacacattaacataaacgccaatatccctcttctacaa
gcccatcctcagttgaagcagtgtgtgaggcaatcagttgagcgtgccgtccaggagctg
gtgcacccggtggttgaccgctctatcaaaatcgcaatgacgacatgcgagcaaattatt
cggaaggactttgcgctagattcggaggagtcccgcatgcgtgtggcggcccaccacatg
atgaggaacctaactgccggcatggccatgatcacctgccgggagcccctgctcgtcagc
attgctgctaatctcaagaacagttttgcggctgcgctgagggcaccaactccccagcag
agggaaatgatggaagaggctgcagccagggtttctcaggagaactgtgaactagcatgt
tgctttattcagaagacggcggtagagaaggctggccctgaaatggacaagaggcttgcc
acggaatttgagttgaggaagcacgcacgtcaagaaggacgccgttactgtgatccagtt
gttctgacttaccaggccgaacgtatgccagagcagataagactaaaagtgggaggagtc
gaccccaagcagctagcagtgtatgaggagtttgcaaggaatgttcctggtttcttaccc
agtaatgatctttctcaaccaactggtttccttgcacaaccaatgaagcaacaagcctgg
gccacggatgatgttgcccaaatctatgacaagtgcatggcagacttggaacagcatctt
cacgccatccctcaggcgctctccatgaatcccctgacccaagccctgcgcagcctgctg
gaggctgtggcattggcaagaaactccagggacggtattgcagctcttggactgctgcag
aaggctgtggaaggtctactggatgccacgagcggggctgataatgacttgcttctccgg
tatcgggagtgccacctgctggttcttaaagccctccaggatgggcgtgcatacggaccg
cagtggtgcaacaaacagatcaccaggtgtctaattgagtgccgggatgagtacaagtac
aatgttgaggcggtggagcttttgatccgaaaccatcttgttaatatgcagcagtatgat
ctacacctggcccagtcgatggagaatggacttcactacatggctgtggcgtttgcaatg
cagttagtgaagctgctgctggtggatgagcgcagtgtcagtcatgtcaccgaagcggac
cttttgcacaccattgagactttaatgaggacctgtgcacactctcgagcaaatgcacca
gaagggcttccacagttgatggatgttgtccgctccaactacgaggccatgattgaccgg
gcccacggtggtccaaacttcatgatgcactctgggatctcccaggcttcggagtacgac
gatcctcccggcttacgggagaaggcagagtatctcttgagggaatgggtcaacctgtac
cactcggctgctgccggccgggacagcaccaaagcattctctgcctttgtcggccagatg
caccagcaaggcattctgaagacggacgacctgatcacgcgcttcttccggttatgtacc
gagatgtgcgtggagatcagttaccgtgcacaggctgaacagcagcacaacccagcagcc
agcgcagccatcatcagagccaagtgctaccacaacctggacgcctttgttcgactcata
gccctgcttgtcaagcattctggagaagcttccaacactgtgaccaagatcaacctcctc
aacaaggtgctgggaatcgttgttggggttttgatccaggatcatgatgtgcgtcagact
gaattccagcagctgccctaccaccgcattttcatcatgctgcttttggagctgaacgcc
cccgagcacgtcctggagaccatcaacttccagacgctcaccgccttctgcaacaccttc
cacatcctgagacccaccaaggcaccaggttttgtgtacgcgtggcttgaactgatttct
catcgcattttcatcgcccgcatgcttgcacacacgccacagcagaagggttggccgatg
tatgcgcaattactcattgatctcttcaagtacctggcacctttcctgaggaatgtagag
ctcaacaaacctatgcaaatcctctacaagggcacactgagggtactgctggtcctgttg
cacgacttcccagagttcttgtgcgattaccattatgggttctgtgacgtgatcccaccc
aactgcattcagctgcgcaacctcattctgagtgcctttccacgcaatatgaggcttcct
gaccctttcactcccaatctcaaggtggacatgctgagtgagatcaacatcgctcctcgc
atcctcacaaacttcacagccgttatgccttcccagttcaagaaggatctggactcgtat
cttaaaacacgttcgccagtcactttcctttcagagttgcgcagcaatctacaggtttcg
aacgagccaggaaaccgctacaacatccagctgatcaacgctttagtgttgtacgtgggc
acccaggccatcgcgcacatccacaacaagggcagcacgccctccatgagcaccatcacc
cactctgcacacatggacatcttccagaacctggctgtggacctggacacagagggacgt
tatttgttcttgaacgccattgccaatcagctgcgctacccgaacagccacacacattac
ttcagctgcaccatgctctatctgtttgccgaggcaaacactgaggccatccaggagcag
atcaccagggtcctgttggagcggctgattgtgaaccggccccacccgtggggtctcctc
atcactttcatcgagctcatcaagaatcccgctttcaagttctggagccatgactttgtg
cactgtgcccctgagattgaaaagttgttccaatcggtggctcagtgctgcatgggtcag
aagcaggcccaacaggtgatggaaggaaccggcgccagctag
DBGET
integrated database retrieval system
