Haliotis cracherodii (black abalone): 139458398
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Entry
139458398 CDS
T10814
Name
(RefSeq) ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139458398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139458398
03036 Chromosome and associated proteins [BR:
hcra03036
]
139458398
Enzymes [BR:
hcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139458398
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139458398
mRNA degradation factors
5'-3' decay
Decapping complex
139458398
Chromosome and associated proteins [BR:
hcra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139458398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
139458398
NCBI-ProteinID:
XP_071095917
LinkDB
All DBs
Position
Unknown
AA seq
453 aa
AA seq
DB search
MASPQVELQNTNNHTSHANAADIKASAAANDQGWKAQLKKPPKDCRVRTSDVTNTKGNEF
EDFCLKRELLMGIFEKGWEKPSPIQEASIPIALTGRDVLARAKNGTGKTGAYAIPIIERT
DSSRDEVQSMIIVPTRELALQTSQICIELCKHLGCKVMVTTGGTNLKDDIMRLYDPVHVI
IATPGRILDLMNKNLVKMGKCGILVLDEADKLLSQDFKGMLDNIISHLPPDRQILLYSAT
FPLTVEQFMRKHLKTPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSII
FCNSTNRVELLAKKITELGYSCYYIHAKMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGID
IQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGVAINLITYDDRFALHKIEQELGTEIKP
IPKQIDPSLYVAEYGMEREDDDDPRTGATAGGN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccacaggtggagctacaaaatacaaacaaccatactagtcatgctaatgct
gccgacatcaaggcttctgccgcggcaaatgaccagggttggaaagcccaacttaaaaag
ccaccaaaagattgtagagtcagaacctctgatgtgactaataccaaaggaaatgaattt
gaagatttctgcctgaaacgcgaacttcttatgggtatattcgagaaaggttgggaaaaa
ccctctcctattcaagaagctagcattcctattgcactaacagggcgtgatgttttggca
agagccaagaatggtactggaaaaacgggtgcctacgcaattccaattatagaaagaacc
gactcttcacgagatgaagtacaatcgatgataatagtacccacaagagagctggcacta
cagactagtcagatatgtatagaactgtgcaagcatctgggctgtaaagtcatggtcaca
accggtggaacaaatcttaaagatgacatcatgaggttgtatgatccagtgcatgttatt
atcgccaccccagggcgtatccttgatctcatgaacaagaatttggtgaagatgggcaaa
tgtggcatattagttcttgatgaggcagacaagctgttgtctcaggacttcaaggggatg
ttggacaacattatcagccatctaccaccagacagacaaatcctgctctactcggctacc
ttccctcttactgtggagcagtttatgaggaaacacttgaaaaccccctatgagattaac
ttgatggacgaactgacactgaagggtgtaacacagtattatgcatttgtacaagaaaaa
cagaaggttcactgtctcaacacattattttcaaagctccaaatcaaccagtccatcatc
ttctgtaactcgacaaaccgtgtggagctgttggccaagaagattacagagttgggttac
tcctgctactacatccatgccaagatgaaccagcaacatcgtaaccgtgtgttccacgac
tttaggcaggggctctgtcgcaacctcgtctgctcagatctgtttacgagaggtattgac
attcaagctgtcaatgttgtcatcaactttgacttcccgaagcacgcagaaacatacctc
cacagaattggtcgatcaggaagatacggccaccttggcgttgccataaatctgattact
tatgatgacagattcgctttacacaaaatcgagcaagaactgggcacagaaatcaaacca
atccccaaacagattgacccctcattgtatgtggctgagtacggaatggagagagaggat
gatgatgatccacgcacaggggcaacagccgggggcaactga
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