Halomonas campaniensis: FF32_07145
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Entry
FF32_07145 CDS
T03198
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FF32_07145 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcs03021
]
FF32_07145 (rpoB)
03400 DNA repair and recombination proteins [BR:
hcs03400
]
FF32_07145 (rpoB)
Enzymes [BR:
hcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FF32_07145 (rpoB)
Transcription machinery [BR:
hcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FF32_07145 (rpoB)
DNA repair and recombination proteins [BR:
hcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FF32_07145 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AIA74628
LinkDB
All DBs
Position
1596108..1600184
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEIGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMSTEEILEEFFETSKFSIEKTG
FFVELVPSRLRGETATFDIKDGEGNVIVEEGRRITQKHIRQLEKAGLERLEIPMEYLFGK
TLAKDQIDTKTGELICPCNTEITPEVLERMAQGGITHIETLYTNDLDCGSFISDTLKLDA
TGSALEALVEIYRMMRPGEPPTKEAAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDTDT
GSGVLDRKDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVN
SCQVTDDIVHLSAIEEGDFVIAQASATVDESNRLSDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDARRVVVRVHEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
SVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGPEEITADIPNVGESALGKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALAIEQMQLDE
VRKDLQETYRIAEDATFERLQRTLEGQAVNGGPNLKKGDVLDEAYLDELPRQQWFKLRMQ
DEAYNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIDAMLRDARGQQVAEIRDFLGQIYNTPGTRVEDIDSLSDEEIIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMTLYDGRTGDAFDRSVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacttgctggccatccagcttgattcctactacgactttctccag
caggatcgttcgcccgacgagcgccacgagattggtctgcacgcggcgtttaagtccgtg
tttccgatcgaaagcttctctgggaatgcggcgctggagtatgtcagctaccgtttcggc
acgccggcgttcgatgtaaaggagtgtcagctgcgtggcgtgacctattccgccccgctg
cgtgtcaaggttcgcttgatcatctatgatcgcgactcctcgaacaaggcaatcaaggat
attaaagagcaggaagtctacatgggggagatccccctgatgaccgagaatggtaccttt
gtcatcaatggtactgagcgggttatcgtttctcagctccaccgttcgcccggtgtgttc
ttcgatcacgataaaggcaagagtcactcctctggtaagctgctctattctgcccgagtg
attccttatcgtggttcctggctggacttcgagttcgatcctaaagacaacgtcttcgta
cgtattgaccgtcgccggaaactgccagcgtcggtgttgatgcgtgccctgggaatgagc
accgaagagatccttgaagagtttttcgagactagcaagtttagcattgaaaaaactggc
ttcttcgtagagctggtaccgtcacgcctgcgcggtgaaaccgcgactttcgacattaaa
gatggcgaaggtaatgtcattgttgaagaagggcgtcgtattacccagaagcacatccgc
cagcttgaaaaagccggcctggagcgtctggaaataccgatggagtacctgtttggtaaa
acgttggccaaggatcagatcgatactaaaactggcgagctgatctgcccgtgtaatacc
gaaattacgccagaagtacttgagcgtatggcgcagggtggcatcacccacatcgaaacg
ctctacacgaacgatctcgactgtggttcgtttatttccgatacgcttaagctggatgcc
accggctccgcgcttgaagcgttggtcgaaatttatcgcatgatgcgccctggtgagccg
cccaccaaagaagctgctgagacgctgtttaataacttgttcttcagcgaagatcgctac
gacctgtcaggcgtcggtcgtatgaagtttaaccgccgtctgcgtcgtgataccgacacg
ggctctggcgtgctagatcgcaaagacatccttgatgttctgcgcgagctgatcaatatc
cgtaacggctttggtgacgttgacgatatcgatcacctgggtaaccgccgtattcgctgt
gttggcgaaatggctgaaaaccagttccgcgttggcttggttcgcgtagagcgtgcagtg
aaagagcgtctttccatggcggaaagcgaaggtctgatgccgcaagatctgatcaacgct
aagccggtagcggcagcggtgaaagagttcttcggttctagccagctttcccagtttatg
gatcagaacaacccgctttctgaggttactcacaagcgtcgtgtgtctgcactcggccca
ggtggtttgacccgtgagcgtgccggtttcgaagtgcgcgacgtacacgctacgcactac
ggtcgcttgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcgttg
gcgacgtacagtcacaccaacagctacggcttcctcgaaacgccgtaccgtaaggtcaac
tcctgtcaagtgacggacgatatcgttcacctgtcggcaatcgaagagggtgatttcgtt
attgcccaggcgtcagctactgtggatgagtccaacaggctgagtgacgacttggttcag
gtgcgtcaccgtggtgaaaccacgtttatgcgtcctgagcaggtcacactaatggacgtg
tctccgcgccaggttgtttcagtcgcggccgcactgattccgttcctggagcacgatgat
gctaaccgcgccttgatgggggcgaacatgcagcgtcaggcggtacccaccttgcgcgct
gacaagccgctagtgggtactggcatggagcgcttcgtagcgcgtgactccggtgtttgt
gccgtggcacgtcgtggtggtgtgatcgactccgttgacgcgcgtcgtgtcgtggtgcgg
gtacatgaagatgagatcatcggcggtgaagccggtgttgatatctacaacctgaccaag
tacacccgttcaaaccagaacacctgtatgaaccagcgccccattgtgcggcctggcgac
agtgtggcccgtggcgatatccttgccgacggcccgtctgttgatatgggtgatttggcg
ctcggccagaacatgcgcatcgcgttcatgccctggaatggttacaacttcgaggactct
atcctgctgtctgagcgggtggttcaagaagaccgcttcaccacgattcatattcaggaa
ctgacctgtgtatcccgcgataccaagttagggccggaagagatcaccgccgatattccc
aacgttggtgagtccgcgctgggtaaattggacgaagcgggtgttgtttacatcggtgct
gaagttggccccggcgatatcctggtcggtaaggtaacaccgaaaggtgaaacccagctg
acgccggaagagaagctgctacgcgctatcttcggtgagaaagcatctgacgttaaagat
acttcgctgcgtgcgccgaccggcatgaagggtactgtcatcgacgtccaggtatttacc
cgtgacggcgttgaaaaagactctcgtgcacttgctatcgaacagatgcagctggacgaa
gtgcgtaaagatcttcaggaaacctatcgtatcgctgaagacgctacttttgagcgtttg
cagcgtacgttggaaggccaggctgttaatggcggcccgaacctgaagaaaggcgatgtg
cttgacgaggcttacctcgacgagctaccgcgtcagcagtggttcaagctgcgcatgcag
gatgaggcttacaacgagctcttggcccaggccgatgagcagctcgaaaaccgtcgtaaa
gagatggacgagcgctttgaagataagaagcgcaagctgacccagggcgatgatctcgca
ccgggcgtgcttaaaatcgtcaaggtttacatggcggttaagcgtcgtattcagcctggc
gacaagatggcaggccgtcacggtaacaaaggtgttatctcggcgatcatgcccatcgaa
gatatgccattcgatgagaagggcgagccggttgatgtggtgttgaacccgctgggtgta
ccgtcgcggatgaacgttggtcagatcctggaaacacacttgggtatggctgcccgtggt
ttgggtgtcaagattgacgcgatgttacgtgatgcccgtggtcagcaagttgctgaaatt
cgtgacttcctgggccagatatataacacgccgggaacccgtgttgaggatatcgactcg
ttaagcgatgaagaaatcattgcgctagcgaaaaacctcaaaggcggtgtgcccatggca
acgccggtgttcgatggtgctaaagagcacgagatcaaacacttgctgaagcttgctgac
attcctgagtctggccagatgacgctgtacgatggccgtactggcgatgcgtttgaccgc
tcggtgaccgttggctacatgtatatgctcaagctgaaccacttggtagacgacaagatg
cacgcgcgctctaccggttcttactcgctagtgactcagcagccgctgggtggtaaggcg
cagttcggtggtcagcgctttggtgagatggaagtgtgggcgctggaagcttacggtgcc
gcgtatacgctgcaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtataaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactcgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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integrated database retrieval system
