Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0033
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Entry
HDEF_0033 CDS
T00911
Symbol
recB
Name
(GenBank) exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDEF_0033 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_0033 (recB)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HDEF_0033 (recB)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HDEF_0033 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Stonustoxin_helical
Motif
Other DBs
NCBI-ProteinID:
ACQ66808
UniProt:
C4K848
LinkDB
All DBs
Position
complement(31943..35569)
Genome browser
AA seq
1208 aa
AA seq
DB search
MEFSMKKIQSLDPMILPLFGERLIEASAGTGKTFTIGILYLRLLLGLGGHHAYIRRLTVE
EILVVTFTQSATEELRGRIRSEIYNLRMACLNEGTQNAFYQKLLAEITDLNAAASILLFA
ERNMDQAAIYTIHGFCQKTLLNNAFESGVLFKQTFIQNEDKLIRQTCADFWRRSCYLLSF
EEAVAISQEWASPQALLKEISPYLEGEAPQLRNPPSEDESIQSRHQKIIKQITELKLKWQ
TTVPDLKTLIDKSGVDKRTYNSRYLPIWLEKITQWAYQESGSYFLPKELNRFRQSILFEK
TQKGHPPQHPLFSLIDFIFFQGLTLRDVVLTKAIKEIRLSLEKEKRRRGELSFDDLLKNL
DTALKQKGGNLLSETIRKQYPIVIIDEFQDTDPQQYRIFHSIYAKKKDCGLLLIGDPKQA
IYAFRGADIFTYIRARSQIAHQYTLETNWRSSPAIVKAVNQLFTQIETPFLFSQIPFVEA
IASDKNRTYQLTIDKKIQPALHFWLQKGEGITVNQYKKCMSNQCAIEIRDWLTAGQQGRA
QLMSDQGVRSVKAADIAVLVRTRTEAALVKKALNRLSIPSVYMSNRDSVFDTPEAKDLLW
ILQAVLAPEIEKFLRCAMATSLLGLNTNALQALQSDGQAWDALVDEFHDYRQHWQKKGVL
PMLRKLIFQRRLAENLLKTQEGERRLTDLLHLSELLQQISEELDSEQALVRWLAQKITEF
NAESEDQKLRLETDCDLIQIVTVHQSKGLQYSLVWLPFIGYFQHQPHDERAQKEVFYHEP
EHCTAVLDFKATHENRALAEKERLSEDLRLLYVALTRSVYHCSIGIAPFIKGGRKKQRES
DIHLSALGYLIQKGMAGDAQYLSEKLKELEGEHIAVSLANPSDFSLWQPTKEPLPELTAR
HFTRKMQDHWQVTSYSKLQDSSSLTHSTVNRLKTDHILMQELLPSLDTEVITDVMNDPLF
SSENSLSPHTFPRGAIPGTFLHDLLERLDFSQSIEIEWLKMQLLQKGFDEKWLPMLHDWL
TEILDTPLNDKRDLSLSKLTEKNKQVELQFHLPIDAMLESSNLDVLIKKHDPLSALCSTL
SFPKVQGILTGFIDLVFFWQDQFYLLDYKSNWLGTSAKAYHRQSIEQAMAEHRYDLQYQL
YTLALHRYLRHRIPNYQYERDFGGVIYLFLRGVDSQTLGQGIFHCCPSFQLIEGLDQLFK
GEKGGATE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggagttttcaatgaaaaaaattcaatcacttgacccgatgattttaccgctttttggg
gaacgtttgattgaagcttctgcaggcacgggaaaaaccttcactattggcatactctat
ttgcgcttactgctgggtttgggcggtcatcatgcttacatacgtcgtttaacagtcgag
gagattttggtagtcacctttacccagtccgcaacagaagaactcaggggcagaattcgc
tctgagatctataacttaagaatggcttgtcttaatgaagggactcaaaatgctttttac
caaaaattattggcagagatcacagatcttaatgcggcggcctcaatactactgtttgca
gaacgcaatatggatcaagctgctatttatacaattcatggattctgccaaaaaacttta
ctgaacaatgcatttgaatctggtgttctttttaaacaaacattcattcaaaatgaagac
aagcttattcgccagacttgcgctgatttttggcggcgctcctgttatttattatcattt
gaagaagcggtagcaatcagtcaagaatgggctagccctcaagcattacttaaagaaatt
tccccttacttagaaggagaagcgccacaattacgtaacccgccttctgaagacgaaagc
attcaaagccgtcatcaaaaaatcataaaacaaatcaccgaacttaagctcaaatggcaa
accacagttccagatttaaaaacattaatcgacaaatcgggggtagataaacgcacttat
aacagcagatatctcccgatttggttagaaaaaatcactcaatgggcctatcaagaaagt
gggtcctattttttaccaaaggagttaaacaggtttcgtcaatccattctttttgaaaaa
actcaaaaaggacatcctcctcaacatcctcttttttcgctcattgattttatttttttt
caaggcctgacattacgagatgtcgtgcttacaaaagcgattaaagaaattcgcctttct
cttgaaaaagaaaaacgaagacgaggagaattaagctttgatgacttactcaaaaacctg
gatacagcactcaaacaaaaaggaggaaacttactatccgaaaccattagaaaacaatat
cctattgtaataattgatgaatttcaggataccgatcctcaacagtatcgtatttttcac
tctatctatgctaaaaaaaaagattgtggcttattactgataggcgatcccaaacaagct
atttacgcttttcgtggcgccgatattttcacttatattcgtgcacgctctcaaatcgcg
catcagtacacattagaaaccaactggcgttcttctccggccatcgtcaaagcagtcaac
cagctttttactcaaattgagaccccttttttattttcacagatcccttttgttgaagcg
attgcttcagacaaaaacagaacttaccaattaacaatagataaaaaaatacaacctgca
ttacatttttggttacagaaaggggaagggatcactgttaatcaatacaaaaaatgtatg
tctaatcaatgcgcgattgaaataagagattggttaacagcaggccaacaagggcgagca
cagctgatgagtgatcagggggtacgctcagtgaaagcagctgatattgcggttttagtc
agaacccgcactgaagcggctttagtaaaaaaagcgttaaacaggctgtctattccttcg
gtttatatgtctaacagagacagtgtcttcgatacgccagaagcaaaagatctactatgg
attttgcaagcggtgttagcacctgaaatcgaaaaatttttacgttgtgctatggcaacc
agtttgttggggttgaacacaaacgccttacaggcgctacagtccgatgggcaagcatgg
gatgctttggtcgatgaatttcatgactatcgtcaacattggcaaaaaaaaggggtctta
cccatgctgagaaaactcatttttcagcgtcggttggcagaaaacctattgaaaacccaa
gagggtgagcgtcgtttaaccgatttactacatctcagtgaactgctacagcaaatttca
gaggaactggacagtgaacaggcattagtcagatggcttgctcaaaagatcacagaattc
aatgctgaatcagaagatcagaaactgaggctagaaacagattgtgatttgattcaaatt
gtgactgttcatcaatctaagggattacaatattcattggtttggctcccctttataggt
tattttcaacatcagccacatgatgaacgcgcccaaaaagaagttttttatcatgaacct
gaacactgtaccgcggttttagactttaaggccacccatgaaaatagggctttagctgaa
aaagaaagactctcagaagacctacgtttactgtatgtcgcattaacacgttctgtttat
cattgctctatcggtattgctcctttcattaaagggggaagaaaaaaacaacgagaaagt
gacatacatctgagtgctttggggtatctgattcaaaaaggcatggcaggggatgctcaa
tatttatctgaaaaattaaaggaactggaaggcgagcatattgccgtttctttggcaaat
ccctccgattttagcctttggcaaccaacaaaagaaccattacctgaattaacagccagg
cactttacaagaaaaatgcaagatcattggcaggtcaccagttattcgaaattacaagac
tcttcgagcttaacccattcaacggttaatcggctcaaaaccgatcatattttaatgcaa
gaattgttgccttctttggacactgaagtcatcacagacgtcatgaacgacccccttttt
tcatcagaaaacagcttgagccctcatacctttccacgtggagcgatacctggaacattt
cttcatgatctattagaacgattagattttagtcaatcgattgagatcgaatggttaaag
atgcaattacttcaaaaaggatttgatgaaaaatggctaccaatgttgcatgattggtta
acagagatcctggataccccgctcaatgacaaaagagatctgagtttatcgaaattaaca
gaaaaaaataaacaagttgaattgcaatttcatttgccgatcgatgcaatgttggaatcc
tcaaacctagatgtgttgattaaaaaacacgatcctctttcagcactgtgctcaacatta
tcttttccaaaggtgcaaggaatattgacggggtttattgatttggttttcttctggcaa
gatcaattttatcttttggattacaaatctaactggttaggaacaagcgctaaagcgtat
catcgtcagtctatagaacaggcgatggccgaacatagatatgatttacagtatcaatta
tatacgttggcgttacatcgttatctacgccatcggattccgaattatcagtatgaacgc
gatttcgggggtgttatctatttatttttacgtggggttgatagccaaactttgggacag
gggatttttcattgttgcccatcatttcagcttattgaagggcttgatcagctctttaaa
ggggaaaaaggaggggcgacagaatga
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integrated database retrieval system
