KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0209
Entry
HDEF_0209         CDS       T00911                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_0209 (dnaE)
   03430 Mismatch repair
    HDEF_0209 (dnaE)
   03440 Homologous recombination
    HDEF_0209 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_0209 (dnaE)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_0209 (dnaE)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_0209 (dnaE)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_0209 (dnaE)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_0209 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon
Other DBs
NCBI-ProteinID: ACQ66977
UniProt: C4K334
LinkDB
Position
complement(213069..216551)
AA seq 1160 aa
MTDPRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHKV
GIKPIIGADFYVQNPALENNFARLTLLARNQEGYHNITLLISAAYQRGYGSLGPVIDRHW
LIKHKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYIELTRTGRADEES
YLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADPKRPQNYSPQQFM
RSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFFPKYPTGKMSTEDFLIARSQEGL
GKRLEFLFSDPEIRKQKREAYDQRLALELQVINEMGFPGYFLIVMEFIQWAKDNHIPVGP
GRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFDVDFCMEKRDAVIEHVAD
MYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLIPLDLGMTLEKAFVAEPE
LTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKMTDFAPLYCDSQGQNPVTQ
FDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQPIDISLIPLNDPKSFEVL
QRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKQGRET
ISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSLGEADILRRAMGKKDPVEM
AKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYALLSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYHFHVNAQGKIVYGMGAIKG
VGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKLIFSGALDRLGPHRAALMH
ALQNAIKAAEQHAKAELTGQADMFGVLTQDPKKIEQSYAQVPPWQQQTVLDGERETLGLY
LTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVAGFVVSAKVMTTKRGARIGLCKLD
DRSAHLDIMLFNDAFEKYQHLLQKDLILIARGQISFDDFNNGLKMTAHELMDISEAREKH
VRALAISVSHTQVNKVFFDKLRDILEPCRSGSVKIHFYYQGKNASAKLRFGTDWHITPTN
RLLIDLRNLIGHQQVQLEFD
NT seq 3483 nt   +upstreamnt  +downstreamnt
atgaccgatcctcgttttatacatttgagtgtgcacagcgattactccatgatagatgga
ttaaccaagattaagcctttggtgcaaaaagcagcagcgttaggtatgcctgcactcgcc
ctcaccgattttagtaatttttgtggtttggttaaattttatggggctgcccataaagta
ggcattaaacctattattggtgcggatttttatgttcaaaaccctgccctggagaataat
tttgctcgtctcaccctattggctcgcaatcaagagggttatcacaatatcacgctgtta
atatctgcggcctatcaacgaggatatggctctctcgggccggtgattgatcgccattgg
cttatcaaacacaaagaagggctcattctgctttcaggagcaaaaatgggcgatctcggg
caattcattctcagagaaaatcaaagtcagatagatcaatgcctccatttttatcaaaca
catttccctgacaactattatattgagctgacccgtaccgggcgcgcagacgaagaatct
tatcttcattctgcgatcaacattgcagaaaaacatggcatacctgttgtcgctacgaat
catgttcgttttatggatccctctgatttcgatgcacatgaaattcgagtggctattaat
gcgggttttactttagctgatcccaaacgcccgcaaaattatagcccacaacaatttatg
cgttctgaacaagacatgtgtgaactgttttcagatatccccgaagctttaacaaacagt
gttgaaatcgcaaaacgctgtaatctgaatcttcgtttaggggaatattttttcccaaaa
tacccgacaggaaagatgagcacagaggattttttgatcgcgcgatctcaagaagggctg
ggaaaacgcctggaatttcttttctctgatcctgaaatacgcaaacaaaaacgcgaggcc
tacgatcagcgtttagcgttggaacttcaagtgatcaatgaaatgggcttccctggctat
tttttgattgtgatggaatttattcaatgggcgaaagacaatcacattcccgttggccca
ggtcgaggctctggagctggctctttagtggcctatgcgcttcaaatcacagatattgat
ccccttgaattcgatttgctttttgaacgttttttaaatcctgaacgtatttctttgcct
gattttgatgtggatttttgcatggaaaaacgggatgcggtgatagaacatgtcgcggac
atgtacgggcgagaatccgtttcacagatcatcactttcggtaccatggctgccaaagcg
gtaatacgtgatgtggggcgagtgctcggccatccgtacagtttcgttgacaggatcgca
aaattaatccccttggatctcgggatgacattagaaaaagcgtttgtggcagagcctgaa
ttaacgaaagcctatgaagccgatgaagaagttcgaagtttgctggatatggcgcgtaag
ctggaaggggtcactcgtaatgcgggtaaacacgcaggaggcgtggtgatcgcaccgaca
aaaatgactgattttgcccctttatattgcgattctcaaggccaaaacccggtgacgcaa
tttgataaaaatgacatcgaatatgtgggattggtgaagttcgattttctcggtttacgt
actttgaccgtgatccacaaagccgttgagatgatcaatcaacgcatcatcactcaaggc
gcacagcctattgatatctctttgattccgctcaacgatccgaaaagctttgaggtgcta
cagcgatctgaaacgaccgccatctttcagcttgaatccaaaggcatgaaggatttaatc
aaacgcttaaagcctgactgttttgaggacatcatcgcgctggtcgctttatttcgtccg
ggcccattacaatcgggcatggtggataattttattgatcgcaaacaggggcgtgaaacc
atttcttatcctgatattgagtggcaacatccttgcttacagcccgtattagaacccacg
tacggcattattttatatcaagagcaagtcatgcaaattgctcaggtgctttcaggttat
tctctaggggaagcggatatactcaggcgtgccatgggcaaaaaagaccctgttgagatg
gcaaaacagcgatctatttttgaaaatggggccaaagaaaaagggattgatggtcagttg
gccattaaaatttttgatttggttgaaaaatttgccggctatgggtttaacaaatcacat
tctgctgcttatgctttattgtcatatcaaacactgtggctcaaaacacattatccggct
gaatttatggccgccgtgatgacggcagatatggataacaccgataaaatagtagggctg
gtggatgaatgcgcccgcatggggcttacaatgttaccgccagacatcaacagtggattt
tatcactttcatgtgaacgctcaggggaaaattgtctacgggatgggcgccattaaaggg
gtcggagaaggggcaatagaaagtatcttagaagcacgtcgccaaggaggggagtttaaa
gatttgtttgatttctgcgcgcggacagccaaaaaaaaattaaatcgccggatattggaa
aaattaattttctctggggcgctggatagattaggcccacatagagcggcattaatgcac
gccttacagaacgcaatcaaagccgcagaacaacatgctaaagccgaattgactgggcaa
gcagacatgtttggtgtgcttacccaggatccaaaaaaaatagagcaatcctacgcacaa
gtgccgccatggcaacagcaaacggttctggatggagaacgtgaaaccttagggctctac
ttaacggggcatcctattactcagtatttaaaagaaattcgtcactatgtagggtcaagc
cgcttacaggatctttcccccactccaaggggtaaaaatgtcactgtggcaggatttgtg
gtctcagcaaaggtgatgaccacaaaacgaggtgcgcgaattggtctctgtaagcttgat
gatcgttctgcacatttggatatcatgttgtttaatgatgcattcgaaaaatatcagcat
ttattgcaaaaagaccttattctaattgccagaggccagatcagttttgatgattttaac
aatggactaaaaatgaccgcccacgaactgatggacatcagtgaagcccgtgaaaaacac
gtccgggcgcttgcgatttcagtcagccatacacaggtaaataaagtattttttgataaa
cttcgtgacattttagagccctgtcgttcaggaagtgtcaaaatacatttttattatcaa
ggcaaaaatgcctctgctaaattacgttttggtactgattggcatatcacaccgaccaac
cgcttattgattgatttacgtaatttgatcggtcatcagcaggtacaactagaatttgac
taa

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0220
Entry
HDEF_0220         CDS       T00911                                 
Symbol
holC
Name
(GenBank) DNA polymerase III, chi subunit
  KO
K02339  DNA polymerase III subunit chi [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_0220 (holC)
   03430 Mismatch repair
    HDEF_0220 (holC)
   03440 Homologous recombination
    HDEF_0220 (holC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_0220 (holC)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_0220 (holC)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_0220 (holC)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_0220 (holC)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_0220 (holC)
SSDB
Motif
Pfam: DNA_pol3_chi
Other DBs
NCBI-ProteinID: ACQ66988
UniProt: C4K345
LinkDB
Position
complement(228423..228875)
AA seq 150 aa
MKRATFYLMEHGDPIHGLSPEETLTCELSAQHWRAGKKIQILCEEKAQAVRLDDALWLYP
PDAFIPHHLSGEGPKQGAPVEMIWPDCLSHHSADLLINLLSECIDFVGRFTEIIDFVPYE
TTLKQLARARYAYYRQLGFHLITTSPPLSK
NT seq 453 nt   +upstreamnt  +downstreamnt
atgaaacgagccactttttacctgatggagcacggtgatccaatccatggattgtctcca
gaagaaaccttaacctgtgaattgtctgcccaacattggagggcaggcaaaaaaatacag
atcctctgtgaagaaaaagcccaagcggtacgattagatgacgccttgtggctttatccc
cctgatgcttttattccccatcatctttcaggagaaggcccgaagcagggcgcacctgtg
gaaatgatctggcctgattgcctatctcatcattccgctgatctgttgatcaatctgcta
tccgaatgtatcgattttgtgggccgctttactgaaatcattgattttgtaccctatgaa
acgaccttaaaacagttggcaagagcgcgatacgcttattatcgccaactcggttttcat
ttaatcaccaccagccctccattgagtaaataa

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0452
Entry
HDEF_0452         CDS       T00911                                 
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_0452 (holB)
   03430 Mismatch repair
    HDEF_0452 (holB)
   03440 Homologous recombination
    HDEF_0452 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_0452 (holB)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_0452 (holB)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_0452 (holB)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_0452 (holB)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_0452 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 DNApol3-delta_C HolB_lid DUF6587
Other DBs
NCBI-ProteinID: ACQ67206
UniProt: C4K3R3
LinkDB
Position
455440..456423
AA seq 327 aa
MNWYPWLNAHYHQLVEQHILGRGHHALLIHALRGNGKNALIYGLSRWLLCQKRQGKKSCG
QCHSCHLMLAGHHPDCHLFKIKENQRNLGIDSIRQVIEKLSHHPQQGGARVISIPNVHDL
TVAAVNALLKTLEEPPKNTYFLLGCHTPSVLMPTLKSRCFCWRLFNPPTNLTLTWLAEKT
GADPILVSTALKLSSGAPLSALSLLQKDRWNERVFFCLTLSDVLSRQNFLALLPQLNHDN
IEDTLHWLISLLLDALKYHHGITFSMINEDQQPLVEKLATLFSISGLFKILRQSIYCRHQ
LLSIVGINKELLLTEQLLNFENALNEL
NT seq 984 nt   +upstreamnt  +downstreamnt
atgaattggtatccgtggctcaatgctcattatcatcaattagtagagcagcacatttta
ggacgtgggcatcatgcattactgattcatgcattacgaggaaatggtaaaaacgccctt
atttacggtttaagccgctggttgctttgccagaaaagacaaggcaaaaaaagttgtggt
cagtgccatagctgtcatttaatgttggccggacatcatccagactgtcacctgtttaaa
ataaaagaaaaccaaagaaatttaggtatcgattccatcagacaggtgatcgaaaaactg
tcacaccatccacaacagggaggagccagggtcatttctatccctaatgtccacgatctc
actgttgctgcagtgaacgcgttattaaaaacgttagaagaacctccaaaaaatacctat
ttccttttaggttgtcataccccttcagttttaatgccaacgttaaaaagccgttgtttt
tgttggcgtttgtttaatccaccaacaaatttaactttaacatggttagcagaaaaaaca
ggcgcagatccaatccttgtatcaacagcattgaaattaagttctggtgctccattatcc
gctttatctcttctgcaaaaagatcgttggaatgaaagagtttttttttgtcttacatta
agtgatgtcttgtctcgccaaaattttttggcgttgttacctcaactgaaccatgacaat
atcgaggatactcttcactggttgatttcattattgttggatgctttaaaatatcaccac
ggaataacgttctctatgattaatgaagatcaacaacctttagttgaaaagttagcaact
ttattttctattagcggattatttaaaatactccgccaatcgatttattgccgtcaccaa
ctattatcgatagtggggataaataaagaattattgctcacagagcaacttttaaatttt
gaaaatgccttgaatgagctctga

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0500
Entry
HDEF_0500         CDS       T00911                                 
Symbol
holD
Name
(GenBank) DNA polymerase III, psi subunit
  KO
K02344  DNA polymerase III subunit psi [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_0500 (holD)
   03430 Mismatch repair
    HDEF_0500 (holD)
   03440 Homologous recombination
    HDEF_0500 (holD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_0500 (holD)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_0500 (holD)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_0500 (holD)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_0500 (holD)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_0500 (holD)
SSDB
Motif
Pfam: DNA_III_psi
Other DBs
NCBI-ProteinID: ACQ67254
UniProt: C4K3W1
LinkDB
Position
complement(500793..501227)
AA seq 144 aa
MSNRDRLLQQLGITQWVLKHPSVFQGEMFLQLTENIRFIIVGDPLPAYDNDLIKDVLQAL
RLEPNQVYFLMPFQLKMFPKNTRCHSWRLGVRESLSLIGVQLYSPKWDDFYQNGKAKHAL
WKQICDHETDFYFNCGRSADGISN
NT seq 435 nt   +upstreamnt  +downstreamnt
atgtcaaaccgagatcgattattacaacagcttggaatcacacaatgggtattaaaacac
ccctctgtgtttcaaggtgaaatgtttcttcagttaacggaaaatatccgttttatcatt
gtaggagatcctcttcctgcttatgataatgatttaatcaaagatgtattgcaggcgtta
cgtttagaacccaatcaagtgtattttttaatgccttttcagttaaaaatgtttcctaaa
aatactcgttgccatagctggcgattaggggtaagagaatctctatctttgataggggtt
caattatacagcccaaaatgggatgatttttatcaaaatgggaaagccaaacacgctctt
tggaagcaaatttgtgatcatgaaacagatttctattttaactgcggtagatctgccgat
ggcatatcaaattga

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0683
Entry
HDEF_0683         CDS       T00911                                 
Symbol
dnaQ_1
Name
(GenBank) DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_0683 (dnaQ_1)
   03430 Mismatch repair
    HDEF_0683 (dnaQ_1)
   03440 Homologous recombination
    HDEF_0683 (dnaQ_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_0683 (dnaQ_1)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_0683 (dnaQ_1)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_0683 (dnaQ_1)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_0683 (dnaQ_1)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_0683 (dnaQ_1)
SSDB
Motif
Pfam: RNase_T Rv2179c-like DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: ACQ67421
UniProt: C4K4C8
LinkDB
Position
678882..679607
AA seq 241 aa
MTRQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPNRQVDPEAYQ
IHGISDEFLSDKPRFSEIFSQFFEFIRGSELIIHNAAFDIGFMDYEFSALQQNIPKTNTF
CTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQTL
FSFSDETDETDIRNMTVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEKKEGSCIWRSA
T
NT seq 726 nt   +upstreamnt  +downstreamnt
atgacccgacaaattgttttggatactgaaaccaccggactaaataaaacaggccctcat
tatgagggccacaatattatcgagattggggcggttgaagtcattaaccgtcgcctcaca
ggcaagacttttcatacgtatgtgaggcccaaccgtcaggtggatcccgaagcctatcaa
attcatggtattagtgatgaatttttatccgataaaccgcgcttttctgaaattttctct
caattttttgaatttatacgcggttctgaattaatcatccataatgccgcttttgatatt
ggttttatggattatgaattttcggcgctccagcaaaatatcccaaaaacaaacactttt
tgtacggtcaccgatactttagcactcgcccgccgtttatttcctggtaaacgcaatagt
ttagatgctttatgcgatcgttatcagatagataacagcaaacgtactttacacggggca
ttgcttgatgcgcagattttagcagaagtgtatttagccatgaccggcgggcaaacgtta
ttttctttttcagacgaaacggacgagacagacattcgtaacatgacagtgcgtccaaag
cgggtcaaaacttcatctcaattaaagatcatttacgccagctgtgatgagcttgatgag
catcaagcaagtctggatctcttagaaaagaaagaaggctcttgcatatggcgatctgcc
acctaa

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1740
Entry
HDEF_1740         CDS       T00911                                 
Symbol
dnaN
Name
(GenBank) DNA polymerase III, beta-subunit
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_1740 (dnaN)
   03430 Mismatch repair
    HDEF_1740 (dnaN)
   03440 Homologous recombination
    HDEF_1740 (dnaN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_1740 (dnaN)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_1740 (dnaN)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_1740 (dnaN)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_1740 (dnaN)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_1740 (dnaN)
SSDB
Motif
Pfam: DNA_pol3_beta_2 DNA_pol3_beta DNA_pol3_beta_3
Other DBs
NCBI-ProteinID: ACQ68342
UniProt: C4K6Z9
LinkDB
Position
1581117..1582223
AA seq 368 aa
MKFIIEREHLLKPLQQVISPLSARPTMPILGNLLLQVNENVLFLTATDLQMEMVVRVVLS
HSDLHESGSTTVPARKFFDIWRGLLEGSTITVTLDGDRLLVYSGRSRFSLSTLPSSGFPG
LDDWKTQVAFSLPQETLKKLIDATQFSMAHQDVRYYLNGMLFETENKELRTVATDGHRLA
VCSMSTDETLPSYSVIVPRKGVIELGRLLEASVHPVKLHIGEHNIRAHLDNLTFTCKLID
ARFPDYRRVLPKNPNKILEAKCDLLKQAFSRVAILSNEKFRGVRLYLSHNQMKITANNPE
QEEAEEILDIEYEGEELEIGLNVSYILDILNILKCDKVRFLLINAASSLQIEDHSSQMVS
YILMPMRL
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgaaatttattattgagcgtgaacatttattaaaaccattacaacaggttatcagccct
ttatccgcgcgtccgacgatgcctattcttggaaacttactattacaggtcaatgagaat
gtgttgttcttgacggctactgatctacaaatggagatggtcgttcgagtggttttatct
cattctgatttgcatgagtcaggttctaccaccgttcccgctcgcaagttttttgatatt
tggcgagggttgttagaaggatcgaccatcaccgtaaccctggatggtgatcgcttactt
gtctattcagggcgaagtcgattttcgctttctactttaccctcatctggtttccctggt
ttagatgactggaaaactcaggtcgcattttcgttaccccaagagacattaaaaaaatta
attgatgccactcagttttccatggcacatcaagatgtccgttattatctcaacggaatg
ctcttcgaaacagaaaataaagagttacgtactgttgcaacggacggacatcgtttggca
gtgtgttctatgtctaccgatgagactttgccttcctattcagtcatagtgcctcgcaaa
ggagtgatagaattaggacgtttattagaggccagcgttcatcctgtaaagttgcacatc
ggtgagcataatattcgagctcatctggataatttgaccttcacctgtaaattaatcgat
gcgcgtttccctgattatcgtcgggttcttccaaaaaatccgaataaaatacttgaagca
aaatgtgaccttctcaagcaggctttttcccgagtggctattttatcgaatgaaaaattt
cggggggtgcggctttatctgagccataatcaaatgaaaataacggccaataatccggaa
caagaagaagcagaagaaattttagatattgaatacgagggagaagaactcgaaattggt
ttaaacgtaagttatatactcgatattctcaatattttgaaatgtgacaaagtccgtttt
ctgttgatcaatgcggccagtagcctgcaaattgaagatcattcaagtcagatggtgagc
tatattctcatgccgatgcggctttaa

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2040
Entry
HDEF_2040         CDS       T00911                                 
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit, probably ATP hydrolase
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_2040 (holA)
   03430 Mismatch repair
    HDEF_2040 (holA)
   03440 Homologous recombination
    HDEF_2040 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_2040 (holA)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_2040 (holA)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_2040 (holA)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_2040 (holA)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_2040 (holA)
SSDB
Motif
Pfam: DNA_pol3_delt_C DNA_pol3_delta DNA_pol3_delta_C DUF1292
Other DBs
NCBI-ProteinID: ACQ68612
UniProt: C4K7R9
LinkDB
Position
1869532..1870590
AA seq 352 aa
MKLIDAEQLQEHLKMNLSACYLLYGDEPLLLQESQDHIREAALRRNFTEHFTVTIEGDTE
WENIFRIFQELSLFSSRQTLLVIFPHKLLPASMKDRLGQLVQLLHQNILLMMRFHKLTKA
QENSPWYKALAPYACKINCEKPNHQRLPAWIKTRSKSLCFDIDLPCIERLCECYEGNILA
LSQLLTLLSLVYPNEQLSLPKIEPLLNNFAHFTPYQWSNALLEGKTERALLILKKLQQEE
HEPVILLRILQPDLLLLVTLKRAMAEVPLITLFQQHQVWQSRRTYFTQALQRLSLNVLKQ
GVHLFYQIEISLKQDYALSIWSELETLSLLLCGQPVLSLYPQSFTECFFDEP
NT seq 1059 nt   +upstreamnt  +downstreamnt
atgaagttgattgatgctgagcaattacaggaacacctaaaaatgaatttgagtgcctgt
tatttgctctatggtgatgagcccttgctgctacaggaaagccaggatcatattcgtgaa
gcggcccttcggaggaattttacagagcattttaccgtgacgatagaaggggatacagaa
tgggagaatatctttcgtatttttcaggaattgagccttttttcttctcggcaaacgctt
ttggtgatttttccacacaaactgttacctgcttcaatgaaagacagattggggcaatta
gttcagttgttacatcaaaatattttactgatgatgaggtttcataagctgaccaaggca
caagaaaacagcccttggtataaggcgttagcgccttatgcgtgcaaaatcaattgtgaa
aaacccaatcaccaaaggctgccggcctggatcaaaacgcgaagtaaaagtttatgtttt
gatatagatttaccttgtattgagcggctttgtgaatgttatgaagggaatattctggcg
ctttcacagctgttaacccttctttcgttagtctatcccaacgagcaactcagcttgccg
aaaattgagcctctgttaaataattttgcacattttacgccataccagtggtcaaatgcc
ctgctggagggaaagacggaacgcgccttactgattttaaaaaaattgcaacaagaagaa
catgagcctgttattttactgagaatattacagcccgatctgttgttattggtgacttta
aaacgtgccatggcagaagtgcccctaataaccttgtttcagcagcatcaagtttggcaa
agccgtcgtacttattttactcaggcgctgcaacgtctttcactgaacgtattaaaacaa
ggggtgcatttgttttatcaaatagagatatctttaaagcaggattatgcactttcgata
tggtccgaactagagaccctttctttgttgttatgtgggcagcctgtgcttagcctctat
cctcagagttttactgaatgtttttttgatgagccttaa

KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2087
Entry
HDEF_2087         CDS       T00911                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III, tau and gamma subunits; DNA elongation factor III
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_2087 (dnaX)
   03430 Mismatch repair
    HDEF_2087 (dnaX)
   03440 Homologous recombination
    HDEF_2087 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_2087 (dnaX)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_2087 (dnaX)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_2087 (dnaX)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_2087 (dnaX)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_2087 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_tau_5 DNA_pol3_delta2 DNA_pol3_gamma3 DNAX_ATPase_lid AAA RuvB_N AAA_22 AAA_16 AAA_5 AAA_14 AAA_assoc_2 AAA_30 AAA_18 Adeno_E1B_55K_N AAA_2 PIF1 TsaE nSTAND3 Mg_chelatase EAD10
Other DBs
NCBI-ProteinID: ACQ68653
UniProt: C4K7W0
LinkDB
Position
1908949..1910871
AA seq 640 aa
MSYQVFARKWRPQTFSEVVGQEHVLTALVNSLSLGRIHHAYLLSGTRGVGKTSIARLIAK
GLNCTSGITATPCGKCIHCQGIEQGHFIDLIEIDAASRTKVEDTRELLDNLPYSPTQGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTEPKKLPVTIISRCLQFHLKALNA
LVILNQLEKILAAEKIDSDTEALKLLAKAASGSMRDALSLTDQAVAIGSGKVTTQIVREM
LTILDDGQSLSIIEALAKADAEKIMFEIEQTAAVGKDWENLLIEMLNLFHRIAIKQLLPE
TSYKEYNEVEPEHIELGLSKLARTLAPEKIQFYYQTLLIGRKELPYAPNHRMGVEMTLLR
ALAFHPKKSFPDSKSESIKKNFFDSTENFSMPHLSKQTTENVEALNNKAPETPIVEVLNT
TKILKTRTKLLELQYAPTSKKKENLKNELSVPLEGLIVQSNSFIAKAKKKEIDDSNTRKL
FSEKELSSTQKVLSPVLEYEKSPELLSKLLEEVIKRDPWAAEVEQLGLPKLVHQLALNSF
KKQTINHKIYLHLRSAQRHLNSDSAHKILTEALSHFYNNMVEIIIIEDDDELQLTPWELR
KRIYEEMLTKACQSIIADDTIHTLCGLFDAELDKNSIRPI
NT seq 1923 nt   +upstreamnt  +downstreamnt
atgagctatcaagtctttgcccgaaaatggcggccacaaactttttccgaagtggtcggc
caagaacatgttttaactgcacttgttaatagcctttctctggggcgtattcatcatgcg
tatcttttatctggtacgcgtggagtaggaaaaacctctattgctcgtttaatagcaaaa
gggctgaattgtaccagcggtattactgccactccttgtggtaagtgtattcattgtcag
ggaatagaacagggacattttatcgatttaattgaaattgacgcggcatctcgtactaaa
gtagaggatacacgtgaactattagataacttgccgtattcccctacccaaggccgcttt
aaagtttatttgatagatgaagtccatatgctttcacggcatagttttaatgcattgctg
aagactttagaagaaccgccctctcatgtgaaattcttactggcaaccactgaaccaaaa
aaattacccgtcactattatttcacgttgtttacaatttcatctcaaagcattaaatgca
ctggttattctgaatcagctggaaaaaatattagcggctgaaaaaattgatagtgatacc
gaagcgttaaaactattggcgaaagcggcctctggtagtatgcgtgacgctttgagtctt
accgatcaagcggttgctattggatctgggaaagtgaccactcaaattgttcgtgaaatg
ctaacgatacttgatgatgggcaatcattatctattattgaggctctggctaaagctgat
gctgaaaaaataatgttcgagatagaacaaaccgctgctgttggaaaagattgggaaaat
ttactgatagaaatgttaaatttattccatcgtattgctatcaaacaattattaccagag
acttcttataaagaatacaatgaagtagagccagaacatattgagcttggtttatctaaa
ctggccaggactttggctcctgaaaagattcaattttattaccaaacgttattgattggg
cgtaaagagcttccttatgcgcctaatcaccgtatgggagtggaaatgacgcttctaaga
gcgttagcgtttcatcccaaaaaatcttttccagattcaaagtctgaatctataaaaaaa
aacttttttgatagcaccgaaaatttttctatgccacatttgtctaaacaaacgactgaa
aatgtggaagccctcaataacaaagctccagagactcctatagtagaagtattaaataca
actaaaatattaaaaacacgaacaaaattactagaattacagtatgcgcctacgtctaaa
aaaaaagagaatctaaaaaatgagctatccgttcctttagaaggattaatcgttcaatca
aattcattcattgctaaagctaaaaaaaaagaaatcgacgattcgaatacacgcaagttg
ttctctgaaaaagaattatcatcgacacagaaagttttatctccagtattagaatatgaa
aaatcaccggagttgctctctaaattgctggaggaggtcataaagcgtgatccttgggcg
gcggaagtggaacaattaggtttgccaaaattggtgcatcaacttgctttaaattccttt
aaaaagcaaacgataaatcacaaaatttacttgcatttacgctctgctcaacgtcatcta
aattcagattcagcacataaaattcttactgaggccttaagtcatttttataataatatg
gttgaaattattattattgaagatgatgatgagttacaattgactccatgggagttaagg
aaacggatttatgaggaaatgctgacaaaggcatgtcagtcaatcatagcggacgatact
attcatactctctgtgggctctttgatgcagagctagataaaaatagcattcgccctatt
taa

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