Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0641
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Entry
HDEF_0641 CDS
T00911
Symbol
xthA
Name
(GenBank) exonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HDEF_0641 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_0641 (xthA)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HDEF_0641 (xthA)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HDEF_0641 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
ACQ67382
UniProt:
C4K489
LinkDB
All DBs
Position
638394..639200
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AA seq
268 aa
AA seq
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MKFVSFNINGLRAHPHQLAAIIEKHDPHLIGLQETKVHDDMFPLEEVRRHGYHVFYHGQK
GHYGVALLTKDSPLAIRRGFPTDQEDAQRRIIMADLKTPQGTITVINGYFPQGESRLHPT
KFPAKARFYEDLHRYLTQHFSVQSHVLIMGDFNICPTDGDIGIGEQNRKRWLSSGKCAFL
PEERAWFEHLQSWGLIDLFRVAYPDYEHQYSWFDYRSKGFDENRGLRIDLLLASVPLARL
AINSGIDYEIRGMEKPSDHAPVWSEFKL
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttgtttcttttaatataaatgggctgagggcgcaccctcatcaactcgctgct
attattgaaaaacatgatccgcacctcattggtttgcaggaaacaaaagtccatgacgat
atgttccctctggaggaagttcgtcgtcatggctatcatgttttttatcatggacaaaaa
ggtcattatggtgtggcattactcactaaagattcgcctttagcgatccggcgaggtttt
ccaacagatcaagaagatgcgcaacgccgtattattatggccgatttgaaaacccctcaa
ggcacaatcactgtgatcaatggatattttccgcaaggtgaaagtcgtttgcatcccacg
aaatttcctgccaaagcccgtttttatgaagatttacatcgctatttaacacagcatttt
tctgttcaatcacatgtgctgatcatgggagattttaatatttgccccaccgatggagat
attggcattggcgaacaaaatcgaaaacgttggttgagcagcggtaaatgtgctttttta
ccagaagaacgtgcttggtttgaacatcttcaatcctggggattaattgatctctttcga
gttgcttaccctgactatgaacatcaatattcgtggtttgattatcgttcaaaaggtttt
gatgaaaatagagggcttcgcattgatttattactggcaagcgtccctttagcgcgcttg
gctattaacagtggtattgattatgagatccgtggaatggaaaaaccgtctgatcatgct
cctgtttggtctgaatttaagttgtga
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