Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1815
Help
Entry
HDEF_1815 CDS
T00911
Symbol
uvrA
Name
(GenBank) DNA excision repair enzyme subunit, with UvrBC
KO
K03701
excinuclease ABC subunit A
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDEF_1815 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1815 (uvrA)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDEF_1815 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HDEF_1815 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_25
DnaJ_CXXCXGXG
nSTAND3
NACHT
Viral_helicase1
T2SSE
cobW
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ACQ68410
UniProt:
C4K767
LinkDB
All DBs
Position
1659066..1661897
Genome browser
AA seq
943 aa
AA seq
DB search
MKNIEIRGARTHNLNNITLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSY
ARQFLSLMEKPDVEHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PEHNLSLTAQTVSQMVDHIMAQPAGRRLMLLAPLVNNRKGEQAKILKNLVTQGYIRVRIN
GEIHELLNIPTLDPHKKHSIEVVVDRFKVRPDMAQRLAESFETALELSGGTAVIADMDSP
KSKELLFSDNFACSLCHYSISELEPRLFSFNNPAGACPSCDGLGVQQFFDPQKLIQNEEL
SLAGGAIVGWDRRHSYYFQMLNSLANYYQFDIQTPFRVLKSHIKKAILYGSGNETISFKY
VNDRGDTTIRCYPFEGILNNIERRYKETESIAVREQLGKFISHRCCTSCHGTRLRKEARY
VFIEEKSISELSDLSIAEALLFFESIQLIGQRAQIAEKILQEIRDRLKFLVSVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNQRLINTLIYLRDLGNT
VIVVEHDEDAIRTADHVIDIGPGAGVHGGKVVAEGTVEDIMAAAESVTGQFLSGRRKIII
PSQRVAADHKKVLKLTGAEGNNLKNITLILPVGLLICVTGVSGSGKSTLINDTLYPIAQR
ELNGATETQPARYRKIEGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAAVPE
SRSRGYKAGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVQCDHCKGRRYNRETLEIKY
KGKNIHQVLDMTVEESLNFFQAVPVLTSKLQTLTEVGLSYIRLGQSATTLSGGEAQRIKL
SRELSKRATGKTLYILDEPTTGLHFADIEQLLSVLHRLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGNGGGHILVSGTPEEIVECTDSHTARFLKPLLHKK
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatcgaaattcgaggtgctcgcactcacaatctgaacaatataacattgacc
attcctagagataaattgattgtgattacaggattatctggctctggcaaatcttcgtta
gctttcgatactttatatgctgaaggtcaacgacgttatgtggaatctctttcgtcttat
gcgcgccaatttttatcattaatggaaaaacctgatgtcgaacacatagaaggtctctcc
cccgctatttctatcgaacaaaaatcaacttcacataatcctcgttcgactgtgggtacg
atcactgaaattcatgattatctgcgtctattatttgctcgagtgggtgaaccccgttgc
ccagaacacaatttatcgctcacagctcaaaccgtgagccaaatggtagatcatatcatg
gcccaacccgcagggcgtcgtttgatgttattagcgccattagtgaataaccgaaaaggt
gaacaggctaaaattttaaaaaatttagtgacccaaggctatattcgcgtacggatcaat
ggtgagatacatgagctgttaaatataccgacattagatccacacaaaaaacattctatt
gaagtggtggttgatcgttttaaagtgcgtcctgatatggctcaacgtttggcagaatct
tttgagaccgcattagaattatccggaggcaccgctgttatcgctgatatggactctcca
aaatcaaaagagcttctgttttctgataattttgcctgctctctatgtcattatagtatc
agtgaactcgaaccccgcttgttctcttttaataacccagctggtgcctgtccaagctgt
gatgggttaggcgttcagcaattttttgatccccaaaaactgattcagaacgaagaactt
tccttagccggtggggcaattgtaggttgggatcgccgtcattcttattattttcaaatg
ctcaattctttggcaaattattatcaatttgatattcaaacaccctttcgggttttaaaa
agtcatataaaaaaagcgattttatatggttctggaaacgaaactatcagtttcaaatat
gtgaatgatcgaggtgataccacaataagatgttatccatttgagggtattctcaataat
atagagcgtcgatataaagaaactgaatcaattgccgtccgtgaacaattgggcaaattt
atcagtcatcgttgttgtacctcctgccatggcactcgtctacgtaaagaagcgcgttac
gtttttatagaagagaagagcatttcagagctttctgatctcagtattgccgaagcattg
ctgttttttgaaagcattcagttaattgggcagcgcgctcaaattgcagaaaaaattttg
caggaaatcagagacagactgaaatttttagtcagtgtgggactaaattatctttcactt
tcacgttctgctgaaaccttatccggtggtgaagcccagcgtattcgtttggcaagccaa
atcggggcgggtttaatgggggtcatgtatgtattagatgagccttctatcggtttgcat
caaagagataatcaaagattaatcaataccttgatttatttacgtgatttaggaaataca
gtgattgtggtggagcacgatgaagacgctattcgtaccgccgatcatgtgattgacatc
ggtcctggtgccggcgttcatggaggaaaagtggtagctgaaggaacagtggaagatatt
atggcggcggctgaatctgtaacggggcaatttctcagtgggcgacgaaaaattatcatt
ccatctcagcgtgttgcagcagatcacaagaaagtacttaagttaaccggtgccgaaggc
aataatctcaaaaacatcactttaatattgcctgtgggtttattgatttgtgtgacggga
gtgtcgggttcgggtaaatcaaccctgatcaatgacaccctttatcctattgctcagcgt
gaactcaatggtgccactgagactcagcctgctcgttatcgtaaaattgaaggattagaa
cattttgataaagtgatcgatattgatcaaagcccaattggccgcacacctcgatcgaat
ccagccacttatacgggtgttttcacgcctgttcgtgagttatttgcggcggttcctgaa
tcacggagcaggggttataaggcgggacgttttagttttaatgtgaaagggggtcgttgt
gaagcctgtcaaggagatggactgattaaggtagagatgcattttttgcctgatgtttat
gtgcagtgtgatcactgtaaagggagacgttataaccgtgaaactttggagatcaaatat
aaaggaaaaaatatacatcaagtactggatatgacggttgaagaatctttaaattttttt
caagctgtgcctgtgttaacaagcaaattacagacgttaacagaagtgggtttatcttat
attcgtctgggccaatcagcgacgacgctttctggaggagaagcgcaacggataaaatta
tcgcgtgaactttcaaaacgtgcgacaggaaagacgctatatatattggatgagccaaca
acgggattacattttgcggacatagagcaattattatcggtattacacagactccgggat
caggggaatacgattgtggtgattgagcataatctggatgtgattaaaacagcagattgg
attgtagatttagggcctgaaggcggtaatgggggtgggcacattttggtttcaggcacg
ccagaagaaatcgtagaatgtacagattctcatactgctcgttttttaaagcctttatta
cataaaaaataa
DBGET
integrated database retrieval system
