Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2089
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Entry
HDEF_2089 CDS
T00911
Symbol
recR
Name
(GenBank) gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction
KO
K06187
recombination protein RecR
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDEF_2089 (recR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_2089 (recR)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HDEF_2089 (recR)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HDEF_2089 (recR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Toprim_4
RecR_HhH
Toprim
RecR_C
RecR_ZnF
HHH
HHH_5
DUF6970
Motif
Other DBs
NCBI-ProteinID:
ACQ68655
UniProt:
C4K7W2
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All DBs
Position
1911243..1911851
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AA seq
202 aa
AA seq
DB search
MQTSLVIEALMESLRHLPGVGPKSAQRMAFYLLQSDRSKGIRLAESLLKAMSEIGHCGVC
RTFTEQPCCDICSNVYREKMGQICVVESPSDICAIEQTGQFSGRYFVLMGRLSPLDGIGP
DDIGLPLLEHRLSTEPIKEVILAMNPTVEGEATSNYIAQMCEEYGISTTKIAHGVPIGGD
LEMVDETTLSHALVGRRPMNFN
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccagtttggttattgaagctttgatggaatcattacgccatttgcctggggta
ggcccaaagtctgcccaacgtatggctttttacttgctacaaagtgatcgcagtaagggt
atacgtttagcagagtctttattaaaagcgatgtcggaaattggccactgtggtgtgtgt
cgtactttcactgaacaaccttgctgtgatatttgttctaatgtttatcgagaaaaaatg
ggtcaaatctgtgtcgtagaaagtccttccgacatttgcgccattgagcaaacagggcaa
ttttctggccgttactttgttttgatgggacgcttgtcacctttagatggtattggcccc
gatgatattggtttgcctttacttgagcatcgattatctacagaacccatcaaggaagtt
attttagcaatgaaccccacagtcgaaggtgaagccacttcgaactatattgcgcaaatg
tgtgaggaatacggaatatctacgactaaaattgcccatggtgtacctatcgggggtgat
cttgagatggtcgatgagactactttatctcatgcactagtgggacgacggcccatgaat
tttaactga
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