Hyphomicrobium denitrificans ATCC 51888: Hden_2189
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Entry
Hden_2189 CDS
T01265
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hden_2189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_2189
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hden_2189
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hden_2189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
DnaJ_CXXCXGXG
AAA_21
RsgA_GTPase
nSTAND1
APS_kinase
Motif
Other DBs
NCBI-ProteinID:
ADJ23987
UniProt:
D8JQN3
LinkDB
All DBs
Position
2245522..2248653
Genome browser
AA seq
1043 aa
AA seq
DB search
MKSPTKKLAARPGSELMKTIHVRGAREHNLKNVDLEIPRDALVVFTGLSGSGKSSLAFDT
IYAEGQRRYVESLSAYARQFLEMMQKPDVDHIDGLSPAISIEQKTTSKNPRSTVGTVTEI
YDYLRLLFARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLLLLSPVVRGRKGEYRK
EIAEWQKKGYQRLKINGTVYDIGDAPKLDKKYKHDIDVVVDRIVVKKDLGTRLADSFEQA
LKLSDGLAITEFVDRPLNSPSPRKRGEGQGEGQQQNEKQAAAPHPNPLPIKDGEREQRGV
LQNKNETHERIMFSQRFACPVSGFTIDEIEPRLFSFNAPAGACPTCDGLGSELRFEPDLV
VPDSTLSLEKGAIYPWAKTGVSSPYYEQTLESLAKHYKVSMKTPWERLPKHVQLALLYGS
GDEDIVFTYWDGTRNYSTEKPFEGVIGNITRRFKETDSDWVREELSRYQAAHPCDACGGY
RLKPQALAVKIGGKHIGEVGDLSIKAANEWFADVPKTFTKQQSEIATRILKEIRDRLKFL
NDVGLQYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQKDNDRLLGT
LKHLRDIGNTVIVVEHDEDAIMTADHIVDIGPGAGIHGGRVIAQGSPSDIMESAESLTGE
YLSGVRYVPIPKKRRAPDPKKMLTVTGARSNNLKDVTASIPVGLLTCITGVSGGGKSTLL
IDTIFKAVARKLNNAKDHPGEHDKITGIENFDKIIDIDQSPIGRTPRSNPATYTGAFTPI
REWFAGLPEAKTRGYEPGRFSFNVKGGRCEVCQGDGVIKIEMHFLPDVYVTCEECKGKRY
NRETLAVTFKEKSIADVLDMTVEEGAEFFKAVPSIRDKLETLARVGLGYIKIGQQATTLS
GGEAQRIKLSKELSRRATGRTLYILDEPTTGLHFHDVAKLLEVLHELADAGNTVVVIEHN
LEVIKTADWIVDLGPEGGDGGGTIVAAGTPEDIVKVKESYTGQYLKPVLARRAAAGSTKE
SRDAHQKSESEGTAKKSKRQAAE
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaccgacaaaaaagctggccgcccgtcccggctccgaattgatgaagaccatt
cacgtgcgcggcgcgcgtgagcacaatctaaagaacgtcgatctcgaaattccgcgggac
gcgctggtcgtgttcactgggctttcgggttcggggaaatcgtcgctcgccttcgacacg
atctacgccgagggccagcgccgctacgtcgaaagtctttcggcctacgcgcggcagttc
ctcgagatgatgcagaagccggacgtcgatcatatcgacggtctgtcgcccgccatctcg
atcgagcagaagacgacgtcgaagaacccgcgttcgacggtcggcacggtcaccgagatt
tacgactacctgcgtttgctgttcgcgcgcgtcggcgttccctattcgcccgcgacgggt
cttccgatcgaaagccagaccgtttcgcagatggtcgatcgcgtgctcgcgctgcccgaa
ggcacgcggctgctgctgctttcacccgtcgtgcgcgggcgaaagggcgagtatcgcaag
gaaatcgccgagtggcagaagaagggctatcagcgcctcaagatcaacgggaccgtttac
gacatcggcgacgccccgaagctcgacaaaaaatacaagcacgacatcgacgtcgtcgtc
gatcgcatcgtcgtgaagaaggacttgggcacgcggctcgcagatagcttcgagcaggcg
ctgaagttgtccgatgggctcgcgatcacggagtttgttgataggccgctcaactccccc
tctccccgcaagcggggagagggtcagggtgaggggcagcaacagaacgagaagcaagcg
gccgcccctcaccccaaccctctccccataaaggatggggagagggagcaacgcggcgtt
ttgcaaaacaagaacgagacgcatgagcggatcatgttctcgcagcggtttgcgtgtccg
gtgtcgggcttcacgatcgacgagatcgagccgcggctgttctcgttcaacgcgccggcg
ggcgcctgcccgacgtgcgacggcctcggttcggaactgcgcttcgagcctgatctcgtc
gttccggattccacgctctcgcttgaaaaaggcgcgatctatccttgggcgaagaccggc
gtgtcatcgccctactatgagcagacgctcgaaagcctcgccaagcattacaaagtgtcg
atgaagacgccgtgggagcggctgccgaagcacgtgcagcttgcgctcctctacggctcg
ggcgacgaggatatcgtcttcacgtactgggacggcacgcgcaattattcgaccgagaag
ccgttcgagggcgtcatcggcaacatcacgcggcgcttcaaggaaacggacagcgattgg
gttcgcgaagaactttcgcgctatcaggcggcgcatccgtgcgacgcgtgcggcggctat
cgtctgaagccgcaggcgctcgccgtcaaaatcggcggcaagcacatcggcgaggtcggt
gatctctcgatcaaggctgcaaacgaatggttcgccgacgttccgaagacgttcacgaag
cagcagtcggaaatcgcgacgcgcattctgaaggaaatccgcgaccgtttgaagttcctg
aacgacgtcggcttgcaatacctgacgctatcgcgctcatccggcacgctgtcgggcggc
gaatcgcagcgcatccgtcttgcttcgcaaatcggctcgggcttgacgggcgtgctctac
gtgctcgacgagccgtcgatcgggttgcaccaaaaagacaacgaccgcctgctcggtacc
ctcaagcatctgcgcgatatcggcaacaccgtcatcgtcgtcgagcatgacgaagatgcg
atcatgacggccgaccatatcgtcgacatcgggccgggcgcgggcattcacggcggccgc
gtcatcgcccagggttcgccgagcgacatcatggagtcggccgagagtctcaccggcgaa
tatctgtccggcgtgcgctacgtgccgatcccgaaaaagcgccgtgcgcccgatccgaaa
aagatgctgaccgtcaccggcgcgcgctcgaacaacctcaaggatgtcacggcgtcgatc
ccggtcgggctgctgacctgcatcaccggcgtgtcgggcggcggaaaatcgacgctgctg
atcgacacgatcttcaaggccgtggcgcgcaagctcaacaatgcgaaggatcatccgggc
gagcacgacaagatcaccggcatcgagaatttcgacaagatcatcgacatcgatcagtcg
ccgatcgggcgcacgccgcgttcgaacccggcgacgtatacgggcgcgttcacgccgatc
cgcgaatggttcgcggggctgcccgaagcgaaaacgcgcggctacgagccgggccgcttc
tcgttcaacgtcaagggcgggcgctgcgaggtttgccagggcgacggcgtcatcaagatc
gagatgcacttcctgcccgacgtctacgtgacctgcgaggaatgcaagggcaaacgctac
aatcgcgagacgctcgccgtcacgttcaaggagaagtcgatcgcggacgtgctcgacatg
acggtcgaggaaggcgcagaattcttcaaggcggtgccgtcgatccgcgacaagctcgaa
acgctggcgcgcgtcgggctcggctacatcaagatcgggcaacaggcgacgacgctgtcg
ggcggcgaagcgcagcgcatcaagctgtcgaaggaactgtcgcggcgtgcgacgggacgt
acgctgtacattctcgacgagccgacgacgggtctgcatttccacgatgtcgcgaagctg
ctcgaggtgctgcacgagcttgcggatgcgggcaacaccgtcgtcgtcatcgagcacaat
ctcgaagtcatcaagacggccgactggatcgtcgatcttggccccgaaggcggcgacggc
ggcggcactatcgtcgcggcgggcacgcccgaggacatcgtgaaggtgaaagagagctac
acggggcaatatctgaaacccgtgctggcacgccgcgccgcggccggctcgacgaaggag
agtcgcgacgcgcatcaaaagagcgagtcggaaggcacagccaaaaagagcaagcggcaa
gcggcggagtaa
DBGET
integrated database retrieval system
