Hyphomicrobium denitrificans ATCC 51888: Hden_2571
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Entry
Hden_2571 CDS
T01265
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hden_2571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdn03019
]
Hden_2571
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_2571
Enzymes [BR:
hdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hden_2571
Messenger RNA biogenesis [BR:
hdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hden_2571
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hden_2571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
Helicase_C
HRDC
HTH_40
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADJ24367
UniProt:
D8JT49
LinkDB
All DBs
Position
2626107..2628293
Genome browser
AA seq
728 aa
AA seq
DB search
MPAYAAPLSLPFASDTGDAMSLARAKLEDVFGYKGFRPLQGDIIDTVLRGGDCLALMPTG
GGKSLCYQIPSLVRRGTGIVVSPLIALMQDQVDALKDLGVKAAFLNSTQDRSTQDQIERQ
FAADALDLLYVAPERLVQERTLSLLELSDIALFAIDEAHCVSQWGHDFRPEYRQLKILAQ
RFPRVPRIALTATADERTRQDIISELSLENAASFVASFDRPNIRYTIAELGSGSTRERLW
QFIEAEHPTDAGIVYCLSRKSVEETAAWLSSKGRKALAYHAGLDAHIRAGAQTKFLTEEG
LIIVATIAFGMGIDKPDVRFVAHLNLPKSIESYYQETGRAGRDGEPANAWMAYGLQDIVQ
LRQWIGQSEGSEAFKTVQRQKLDALIGLAEMPGCRRQALLAYFGEMNSEPCGNCDNCLSP
PHTEDGTVVAQKALSAVYRTGQRFGVTYLADVLIGTADERVLRNGHDRLSVFGIGKDLPA
ATWKGLFRQLTAQGYLTGDDEGMGSLVLTERARPLLRGEERFLMRVTQSKSKLAKKRGAS
LAPKVAAQNQPLFDALKAVRLKLATAAKLPPYVVAQDRTLIELAEKRPKSESALHDILGL
GASKIARYGAAFMQVISQFAAHPALTNRLSASVNATLAAHLRGLDAEQIASERGLEVGTI
YGHLAEAIEAGLISAEDAVRLDPAERDEIEAAFDRCETRDTGKLGPAFGALDGRYNYGIL
KCLLADAG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgccggcctacgccgcgccgctctctctgccgtttgcgtccgataccggcgacgccatg
tccctcgcccgcgccaagctcgaggacgttttcggctacaagggatttcgcccgctgcag
ggcgatatcatcgataccgttctgcgtggcggcgattgcctggcgctgatgccgaccggg
ggcggcaagtcgctttgctatcagatcccatcgctcgtccggcgcggcacgggaatcgtc
gtgtcgccgctcatcgcgctgatgcaggatcaggtcgacgcgttgaaggatctcggcgtc
aaggcggcgtttctgaattcgacgcaggaccgcagcacgcaggaccagatcgaacggcag
ttcgcggcggacgcgctcgatctgctttacgttgcgcccgagcggctggtgcaggagcgc
acgctcagcctcctggagctcagcgacatcgccctgttcgcgatcgacgaagcgcattgc
gtttcgcagtgggggcatgatttccggcccgagtaccggcagctgaaaattctggcgcag
cggtttccgcgcgtgccgcgcatcgcgctgacggcgaccgcggacgaacgcacgcgacag
gacatcatttcggagctgtcgctcgaaaacgccgcgagtttcgtcgcgagcttcgaccgg
ccgaacattcgctacacgatcgcggagcttggcagcggcagcacgcgcgagcggctttgg
cagttcatcgaagcggaacatccgaccgatgccgggatcgtctactgcctgtcgcgcaag
tcggttgaggaaacggcggcgtggctcagctcgaagggccgcaaagccctcgcctatcat
gccggtctcgatgcacacatccgcgcgggcgcgcagaccaagtttctgacggaagaaggg
ctgatcatcgtcgcgacgatcgccttcggcatgggcatcgacaagcccgacgtgcgtttc
gtcgcccacctcaatctgccgaagtcgatcgagtcctattatcaggagaccggccgcgcc
ggtcgcgacggcgaaccggcgaacgcctggatggcgtacgggctgcaggacatcgtgcag
cttcgccaatggatcgggcagtcggagggctcggaagccttcaagaccgtgcaacggcag
aagctcgacgcgctcatcgggctggcggaaatgcctggctgccggcggcaagctctgctc
gcctatttcggcgagatgaattccgagccgtgcgggaactgcgacaactgtttaagcccg
ccgcacaccgaggacggcactgtcgtggcgcagaaggcattatcggccgtctatcgcacc
gggcagaggttcggcgtcacctatctcgccgacgtgctgatcggaacggcggacgagcgc
gtgctgcgcaacggccatgaccggctatcggttttcggcatcggcaaggacctgccagcg
gcgacgtggaaagggctttttcggcagctcaccgcgcaaggctatctgacgggcgatgac
gaaggcatggggtcgctcgttctgaccgagcgggctcggccgctgctgcgcggcgaagag
cgttttctgatgcgcgttacgcagtcgaagtcgaagcttgccaagaagcgcggcgcgtcg
ctcgctccgaaagttgcggcgcagaaccagccgctgttcgatgcgctcaaggccgtgcgc
ctgaaactcgcgacggcggcgaaacttccgccttacgtcgtggcgcaggatcgcactctg
atcgagcttgcggagaagcggccgaaatcggaatcggcgctgcacgacattctcgggctc
ggcgcgagcaagatcgcgcgctacggcgcagcattcatgcaggtgatctcgcaattcgca
gcgcatccggcgctcactaaccgcttgtcggcaagcgtgaatgcgacgctggcggcgcat
ctccggggtctcgacgcggaacagatcgcatccgagcgaggactcgaggtcgggacgatc
tacggccacctcgcagaggcgatcgaagcgggtctgatcagcgcagaggacgcggttcgt
ctcgatcctgccgagcgcgacgagatcgaagcggccttcgatcgttgcgaaacgcgcgat
accggcaagcttggcccggcgttcggcgcactcgacggccgctacaattacggcattctc
aaatgcctactcgctgacgctggctag
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