Herbiconiux sp. SALV-R1: HL652_01095
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Entry
HL652_01095 CDS
T06594
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HL652_01095 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hea03021
]
HL652_01095 (rpoB)
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_01095 (rpoB)
Enzymes [BR:
hea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HL652_01095 (rpoB)
Transcription machinery [BR:
hea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HL652_01095 (rpoB)
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HL652_01095 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QJU52383
LinkDB
All DBs
Position
209107..212595
Genome browser
AA seq
1162 aa
AA seq
DB search
MAAARNATTTSPKNGRAHSRLSFAKITDTLTVPDLLALQTESFDWLVGNDVWKARVAEAQ
AAGRQDLPGRSGLDEIFEEISPIEDLGETMQLSFTSPFLEPEKYTIDECKERGKTYAAPL
YVEAEFMNHQTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERTPEK
TSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEEFK
GYASIEATLEKDSILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGR
YKINRKLGIDAPLGDSVLTTQDIIATIKYLVALHDNQTTLNGVRDGKPVEIRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRRVVDGKVTENIDYLTASEEDEYIVAQANAPLTADS
HFAEQRVLARKKGGEVDLFPAEDIGYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPLVGTGMEGFAAIDAGDVVTANGAGVVQEVSADSVSVLLDEGGVETYYL
RKFDRSNQGTSYNNRVIVSEGERIESGQVIADGPATENGELALGKNLLVAFMPWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTIIAVKE
FSAENDDELGSGVNQRVVVYIAQKRKITAGDKLAGRHGNKGVISKILPVEDMPFLADGTP
VDIVLNPMGIPGRMNFGQVLETHLGWIAKQGWEVDGKPKWAANLPEQARSAAPGTKVATP
VFDGASEEEIAGLLDSTTLTRDGERLIGSSGKTQLFDGRSGEPYPDPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEVF
RAAEELGINISSRFESSSIDDI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcaaccaccacttcacccaagaacggtcgggcccactcccgg
ctctcgttcgccaagatcaccgacacgctgaccgttcccgatctgctcgccctgcagacc
gagagcttcgactggctggtcggaaacgacgtgtggaaggcacgcgtcgcagaagcacag
gccgccggccgtcaagacctgccgggtcgctccggtctcgatgagatcttcgaagagatc
tcgcccatcgaagacctcggcgagaccatgcagctgagcttcacgagcccgttcctcgag
cccgagaagtacaccatcgacgagtgcaaggagcgcggcaagacctacgcggcccctctc
tacgtcgaggccgagttcatgaaccaccagaccggtgagatcaagacccagacggtcttc
atgggcgacttcccgctcatgaccgagaagggcacgttcatcatcaacggcaccgagcgt
gtcgtggtgtcgcagctcgtgcgttcccccggtgtgtacttcgagcgcacccccgagaag
accagcgacaaagacatctactccgctcgtgtcatcccgagccgtggtgcctggctcgag
ttcgagatcgacaagcgcgaccaggtcggcgtgcgcatcgaccgcaagcgcaagcagtcg
gtgaccgtcttcctcaaggccctcggcctcacctccgaggagatcctcgaggagttcaag
ggctacgcctccatcgaggccaccctcgagaaggactcgatcctcaccaaggaagaggcg
ctgaaggacatctaccgcaagctccgtccgggcgagcaggtggctgccgaggccgcgcgt
gcgctcctcgacaacttctacttcaaccccaagcgctacgacctggcgaaggtgggtcgt
tacaagatcaaccgcaagctcggcatcgacgctccgctcggcgactccgtgctcaccacg
caggacatcatcgccaccatcaagtacctggtggcgctgcacgacaaccagaccacgctg
aacggcgtgcgcgacggcaagccggtcgagatccgtctcgacgtcgacgacatcgaccac
ttcggcaaccgccgcatccgtgccgtcggtgagctcatccagaaccaggtgcgcaccggt
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggccatc
accccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcgga
acgagccagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacccacaag
cggcgcctcagcgccctgggccccggtggtctgagccgtgagcgcgccggtgtcgaggtg
cgcgacgtgcacccgagccactacggccgcatgtgcccgatcgagaccccggaaggcccg
aacatcggcctcatcggctcgctcgcgtcgttcgcgcgcatcaactcgttcggtttcatc
gagaccccctaccgtcgcgtcgtcgacggcaaggtcaccgagaacatcgattacctcacc
gcgtcggaggaggacgagtacatcgtcgcccaggccaacgcgccgctgaccgccgactcg
cacttcgccgagcagcgtgttctcgcccgtaagaagggtggagaggtcgacctgttcccg
gccgaagacatcggctacatggatgtctcgccgcgccagatggtctccgtcgcgacgagc
ctcatccccttcctcgagcacgacgacgccaaccgcgcgctcatgggcgcgaacatgcag
cgccaggccgtgccgctgctgcgctcggagtcgcctcttgtgggtaccggtatggagggc
ttcgcggccatcgacgccggtgacgtggtcaccgcgaacggcgccggcgtggtgcaggag
gtctcggccgactcggtgagcgtgctgctcgacgagggtggcgtggagacctactacctg
cgcaagttcgaccgctcgaaccagggcacctcgtacaacaaccgtgtcatcgtctccgag
ggtgagcgcatcgagtcgggtcaggtcatcgccgatggccccgccaccgagaacggcgag
ctcgcgctcggcaagaacctcctcgtggcgttcatgccgtgggagggtcacaacttcgaa
gacgcgatcatcctgagccagaacctggtgaaggacgacgtgctctcgagcatccacatc
gaagagtacgaagtggatgcgcgtgacacgaagctcggcaaggaggagatcacccgtgac
ctccccaacgtgagccccgagctcctggccgacctcgacgagcgcggcatcatccgcatc
ggtgccgaggtgcgccccggcgacatcctcgtcggcaaggtcacgccgaagggtgagacc
gagctctccgccgaggagcgtctgctccgcgcgatcttcaacgagaagagccgcgaggtg
cgcgacaccagcctcaaggtgcctcacggtgaagagggaaccatcatcgccgtcaaggag
ttctcggccgagaacgacgacgagctgggttccggcgtcaaccagcgcgtggtggtctac
atcgctcagaagcgcaagatcaccgcgggtgacaagctcgccggccgtcacggcaacaag
ggcgtcatctcgaagatcctcccggtcgaggacatgccgttcctcgccgacggaactccg
gtcgacatcgtcctgaacccgatgggcatcccgggccgcatgaacttcggccaggtactg
gagacccacctcggttggatcgccaagcagggctgggaggtcgacggcaagccgaagtgg
gcggcgaacctgcccgagcaggcgcgttcggctgctcccggcacgaaggtcgccaccccg
gtgttcgacggcgcctcggaggaggagatcgcgggtctgctcgactcgaccaccctcacc
cgcgacggcgagcgtctcatcggttcctccggcaagacccagctgttcgacggccgctcc
ggtgagccctaccccgaccccgtgtcggtgggctacatgtacatcctgaagctgcaccac
ctggtcgacgacaagatccacgcgcgttcgaccggcccgtactcgatgatcacccagcag
ccgctcggtggtaaggcgcagttcggtggccagcgcttcggtgagatggaggtgtgggcc
ctcgaggcctacggcgccgcgtacgccctgcaggagctgctcaccatcaagtccgacgac
atcctcggccgcgtgaaggtgtacgaggcgatcgtcaagggcgagaacatccaggagccg
ggcattcccgagagcttcaaggtgctcatcaaggagatgcagtcgctctgcctgaacgtc
gaggtgctctcggccgacggcaccgctgtgagcctccgcgacacggacgacgaggtcttc
cgtgccgcagaagagctcggcatcaacatctccagccgcttcgagtcgtcgtcgatcgac
gacatctga
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integrated database retrieval system
