Herbiconiux sp. L3-i23: L3i23_01250
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Entry
L3i23_01250 CDS
T08550
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
heh
Herbiconiux sp. L3-i23
Pathway
heh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3i23_01250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heh03019
]
L3i23_01250
03400 DNA repair and recombination proteins [BR:
heh03400
]
L3i23_01250
Enzymes [BR:
heh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3i23_01250
Messenger RNA biogenesis [BR:
heh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3i23_01250
DNA repair and recombination proteins [BR:
heh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L3i23_01250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
BDI21349
LinkDB
All DBs
Position
complement(123586..125694)
Genome browser
AA seq
702 aa
AA seq
DB search
MDTRVAAESALRELVGRPDAVFHDGQFEAISALVDDARRALVVQRTGWGKSAVYFVATRL
LRDRGAGPTLLVSPLLALMRDQVAAAARAGVRAVAINSANAHEWDDVRAQIARDEVDVLL
VSPERLNNPTFRDEQLPELVDRTGLVVVDEAHCISDWGHDFRPDYRRLRELIERIPTGVP
VLATTATANARVVADVAEQLGAAGPAAGAVLTIRGPLARSSLRLGVLRLPNAAARLGWLM
AHISELPGSGIIYALTVSAAEDTARLLREAGHEVLAYTGQTDPDQREQAEELLEQNRVKA
LVATSALGMGFDKPDLGFVLHLGAPSSPVAYYQQVGRAGRATENADVLLLPGPEDPDIWQ
YFATAAMPTQERAEAVLRELGDEPLSTPALEALVDIRRSRLELLLKVLDVDGAVRRVRGG
WVSTGTPWSYDADRYDRIAEARTAEQQHMLDYETTDGCRMEFLQRTLDDPSAAPCGRCDR
CAGAWYPTDVPEDSSREATQSLDRVGVVVEPRAQWPTGASSRGVPVRGNLPQTERAGEGR
ALARLTDLGWGGPLRELFAAGAPDQPVTQGMLEACVRVLAEWKWDERPVGIVTMPSRSRP
LLIDSVADGLARIGRLPRLGALERAGEGGAPGETGNSAYRLGSVWPAFRVGDGLVSELAS
ATGPVLLIDDLADSRWTLTVAARLLRGAGAPAVLPFVLALRS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggatacccgcgtcgctgccgaatccgcactccgcgagctggtcggtcggcccgacgcg
gtcttccacgacggccagttcgaggcgatctcggcgctcgtagacgatgcccggcgggcg
ctggtcgtgcagcgcaccggctggggcaagtcggcggtctacttcgtcgccacccgactg
ctgcgcgaccgcggggccgggcccacactgctcgtctccccgctgctcgcgttgatgcgc
gatcaggtcgccgccgccgcgcgcgcgggagtgcgggcggtcgccatcaactcggccaac
gcccacgagtgggacgacgttcgcgctcagatcgcgcgcgacgaggtggacgtgctgctg
gtgtcgccggagcgtctcaacaatccgaccttccgcgacgagcaactgcccgagctggtc
gatcgcaccgggctcgtcgtggtcgacgaggcgcattgcatctccgattggggtcacgac
ttccgacccgactaccgccggttacgcgaactgatcgagcggattccgaccggcgttccc
gtgctggcgacgacggccacggcgaatgcccgagtcgtcgccgatgtcgccgagcagctc
ggcgcggcagggcccgccgccggtgcggtgctgaccatccgcgggccgctcgcacggagc
tcgctccgcctcggcgtcctgagactgcccaatgccgcggcccggctcggctggctcatg
gcgcatatcagcgagttgccgggcagcggcatcatctacgccctcaccgtctcggcggcc
gaggacaccgcgcggctgctgcgcgaagcaggccacgaggtcctcgcttacacgggtcag
accgaccccgaccagcgcgaacaggccgaagagttgctcgagcagaacagggtcaaggcg
ctcgtcgcgacgagcgccctcggcatgggcttcgacaagcccgatctcggcttcgtgctg
cacctcggcgccccgagctcgccggtggcttactaccagcaggtcggacgcgccggacgt
gccacagagaacgccgacgtcctgctgcttcccggccccgaggatccggatatctggcag
tacttcgctaccgcggcgatgcccactcaggagcgggccgaagcggtgctgcgggaactc
ggcgacgagcctctctccaccccggcgctcgaagcgctggtcgacatccggcgatcgcgg
ctcgagctgctgctgaaggtcctcgacgtcgacggcgcggtgcggcgggtgcgaggcgga
tgggtgtcgacgggaacgccgtggtcgtacgacgccgaccgttacgaccggatcgccgag
gcgcgcacggccgagcagcagcacatgctcgattacgagacgaccgacggttgtcgtatg
gagttcctgcagcgcacgctcgacgatccgagcgcagcaccgtgcgggcgatgcgaccgg
tgcgccggcgcctggtacccgaccgacgtcccggaggactcgagccgggaggccacccag
tcgctcgaccgcgtgggcgtcgtcgtcgagccgcgtgcgcagtggccgacgggcgcgagc
tcccgcggcgtgccggttcgaggcaacctgccgcagaccgaacgagccggtgaaggccgc
gcactcgctcgactcaccgacctcggctggggaggaccgctccgcgagctcttcgccgcc
ggggcgcccgaccagccggtgacgcagggcatgctcgaggcctgcgtacgggtcctcgcc
gagtggaagtgggacgaacgaccggttggcatcgtcacgatgccgagccgcagccgcccg
ctgctcatcgactctgtcgccgacgggctcgcccgaatcggcaggctgccgcgtctcggg
gcgctcgagcgcgcaggcgaagggggcgcacccggcgagaccggcaacagcgcctaccgt
ctgggctcggtctggccggcgttccgggtcggcgacggactcgtgtccgagctggcttcg
gcgacggggcccgtgctgctgatcgacgacctggccgacagccgctggactctcacggtc
gcagcgcgcctgctgcgcggcgccggcgcgccggccgtgctcccgttcgtgctcgccctg
cgcagctga
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