KEGG   Halomonas elongata: HELO_3364
Entry
HELO_3364         CDS       T01311                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
hel  Halomonas elongata
Pathway
hel02024  Quorum sensing
hel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HELO_3364 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HELO_3364 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hel03019]
    HELO_3364 (hfq)
   03036 Chromosome and associated proteins [BR:hel03036]
    HELO_3364 (hfq)
Messenger RNA biogenesis [BR:hel03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HELO_3364 (hfq)
Chromosome and associated proteins [BR:hel03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HELO_3364 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: CBV43248
UniProt: E1V678
LinkDB
Position
complement(2791230..2791481)
AA seq 83 aa
MSKGQSLQDPYLNVLRKERIPVSIFLVNGIKLQGQIESFDQFVILLRNTVSQMVYKHAIS
TVVPSRNVRLPASDVSEQSDSNA
NT seq 252 nt   +upstreamnt  +downstreamnt
atgtccaaaggacagtcccttcaagatccatacctgaacgtactgcgcaaggagcgcatt
ccggtgtcgatcttcctggtcaacggcatcaagctgcagggccagatcgagtccttcgac
cagttcgtcatcctgctgcgcaacacggtcagccagatggtctacaagcatgccatctcc
acggtggtgccgtcgcgtaacgtgcgcctgccggcgagcgacgtgtccgagcagtcggat
agcaacgcgtga

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