Helicobacter pylori BM012S: U064_0923
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Entry
U064_0923 CDS
T02940
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hez
Helicobacter pylori BM012S
Pathway
hez03030
DNA replication
hez03410
Base excision repair
hez03420
Nucleotide excision repair
hez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U064_0923
03410 Base excision repair
U064_0923
03420 Nucleotide excision repair
U064_0923
03430 Mismatch repair
U064_0923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hez03032
]
U064_0923
03400 DNA repair and recombination proteins [BR:
hez03400
]
U064_0923
Enzymes [BR:
hez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U064_0923
DNA replication proteins [BR:
hez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U064_0923
DNA repair and recombination proteins [BR:
hez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U064_0923
NER (nucleotide excision repair)
GGR (global genome repair) factors
U064_0923
MMR (mismatch excision repair)
DNA ligase
U064_0923
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U064_0923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
RabGAP-TBC
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AHA89838
UniProt:
V5NNT5
LinkDB
All DBs
Position
complement(934193..936163)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEENPNGIQANSPTQ
KVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYKGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIQSLFDLLNPKNSDMTEEKQESSSVFNHKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKELD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatacttaaacacgctatcgcac
cattattacaaccttgatgatccaatcgtaagcgacgcggtctatgatgaactttatcaa
gaattaaaagcttatgaagaagaaaaccctaatggcattcaagccaactcccctacccaa
aaagtaggggctactaccaccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaagcgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgaaggcgaccactaggggcaatggcttagaaggagaa
ttagttagcgcaaacgctaaacacatcgctaatatcccccacgctatcgcttataaggga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttgaacaaa
gagcgcttaaacgctaatgagcctctattcgctaaccctagaaatgccgcatcagggagt
ttgagacagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaagagtgtttggattttattgtctca
ctgggttttaattctattcaatacttaagcctaaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagttgggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacaccaaaatcataggagtcatt
aaccaagtggggcgcagcggggcgatcacgccggtcgctcttttagagcctgtagaaatc
gctggagctatgattacgaaagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgacagggttgtggtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagagacggctcgcaacataaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaattcaaaattaaa
aaagctcaaaacctattagacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatattggcaagggagcgagtaaaacgctggccagatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggatttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccaatcgtta
tttgatttgttgaaccctaaaaacagcgatatgactgaagaaaagcaagaaagctcttct
gttttcaatcataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagaattattaaagcgccttaaagaattggattaa
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