Hippoglossus hippoglossus (Atlantic halibut): 117757229
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Entry
117757229 CDS
T07778
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04010
MAPK signaling pathway
hhip04020
Calcium signaling pathway
hhip04260
Cardiac muscle contraction
hhip04261
Adrenergic signaling in cardiomyocytes
hhip04270
Vascular smooth muscle contraction
hhip04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117757229 (cacna1c)
04020 Calcium signaling pathway
117757229 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
117757229 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
117757229 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
117757229 (cacna1c)
04270 Vascular smooth muscle contraction
117757229 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117757229 (cacna1c)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117757229 (cacna1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
CAC1F_C
DUF4834
Motif
Other DBs
NCBI-GeneID:
117757229
NCBI-ProteinID:
XP_034434029
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All DBs
Position
23:11113357..11299293
Genome browser
AA seq
2387 aa
AA seq
DB search
MLRSLFQRKPKHERLEEEPEVRFKGLLVSEKDLGYKYVRPGGSDYSPPPPLPRPPPPGLT
NEHSGGGSHGDHGGGGGGVNHGVGVVGLAPEHMATPGAALSWQAAIDAARQAKAMGNAVS
TQAGLGSGGGGPISTASSTQRKRQHYSSKPKKQTTTTATRPPRALLCLTLKNPIRRACIS
IVEWKPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVI
AYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGATPIGGKAAGFDVKALRAF
RVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCA
HEHIGTIAEEKPAPCAPAGAYGRHCSQNGTECKVGWEGPNDGITNFDNFAFAMLTVFQCI
TMEGWTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGD
FQKLREKQQLEEDLKGYLDWITQAEDIDPENEEEGMDDDKPRNRQNHRFHSLRGAMKRNA
AFLLSMPASENESVNTDNAPGGDVEGETCCTRLANRISKSKFSRYSRRWNRLCRRKCRAA
VKSQLFYWLVIFLVFLNTLTIASEHHQQPQWLTEVQDIANKVLLALFTGEMLLKMYSLGL
QAYFVSLFNRFDSFVVCGGILETILVETKVMSPLGISVLRCVRLLRIFKITRYWNSLSNL
VASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDETRRSTFDNFPQSLLTVFQI
LTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESL
TSAQKEEEEEKERKKLARLASPEKRHNNEKPPLKEEKKKKKKKEKIELKSITSDGETNTA
TKINMDDYIGDETEEKNPYPANDYIGDEDDEEPEMPVGPRPRPLSDVQLKEKAIPMPEAR
AFFIFSHTNKFRVLCHKIVNHNIFTNLILFFILLSSISLAAEDPVKNDSFRNQILGYADH
VFTGLFTIEIILKMTAYGAFVHKGSFCRNYFNILDLVVVSVSLISSGIQSSAINVVKILR
VLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLFKGKFFFC
SDSSKQNQADCRGSYIMYKDGDVGKPERAHRLWENSDFNFDDVLQGMMALFAVSTFEGWP
GLLYRAIDSHAEDVGPVYNYRVVISIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYK
NCELDKNQRQCVEYALKARPLRRYIPKNPYQYKVWYVVNSTYFEYLMFTLILLNTICLAM
QHHGQTKNFNDAMNILNMLFTGLFTVEMILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDV
ILSEINPADSSSSPSSSSSSSSSSSSSSHPPVVRPMVRSDGNLVRLPSSSTIPPSLHPST
PPPATPYMGLQNSEENARISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVA
LLIVMLFFIYAVIGMQMFGKIALRDHTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLA
CSPNRPCEKGSTNENSSPHEDCGSQFAIIYFVSFYMLCAFLIINLFVAVIMDNFDYLTRD
WSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVS
MNMPLNSDGTVMFNATLFALVRTALRIKTDGNLEQANEELRAIVKKIWKRTSMKLLDQVV
PPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVAKVPPKTALSLQAGLRTLHDIGPEI
RRAISGDLTVEEEMDKGLKEPVSAASEDDIFRVKRTGGLFGNHVNYYNQSDGRVSFPQSF
TTQRPLHISQKGSPCEGESPSHEKLMDSTTFTPSSYSSSGSNANINNANNTGMVGVPTQG
VSRFPSPTISTVDGHTGQPLTPILLPRSAWCFPPKRTCFYDNLMRSDSSDSRLPIIRRGE
DSTEETYDESYVDDMEYHEDDHSLSSDMLVYHDETCKQLTPMEEGEEVEDRRGGGGWQSP
RRVFLCPTSLGRRSSFHLECLRRQSRPDVSQKTAVPLHLVHHQALAVAGLSPLLRRSHSP
TLFSRLCSTPPASPTAHGSDASYQRVPSLRLEGSNSHEKLNTSLPSVNCGPWYSDSNGNS
RGPSPSLTPSGSVSYQRAPRPVSLTVPSLLGKDYSSLSHGSAGSLVEAVLISEGLGHFAQ
DPSFIEATKAELADACDMTIEEMEHAANNILNGNNTTTTTTNVTSSTSSNSQNSPNGNLL
PFHTEAASMHRDRVDSLSPSEGGGEAGGSRSSVHELSSMEERQELLAGGRGQEEEEEEEE
EEEEEEAGEEAGEREEGHHRASDVIGETRQRNSGLLEDEDMECVTSL
NT seq
7164 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaagcctgttccagaggaaacctaaacatgagagactggaagaggaacctgag
gtcagatttaaaggcttgctggtgtcagagaaagaccttggatacaaatatgtccgacct
ggaggctctgactactctccccctccccccctgcctcggcctcctccccccggcctgaca
aatgagcacagcggcggtggcagccatggtgaccacggtggcggagggggcggggtcaat
cacggggtgggcgtggtgggcctggctccggagcacatggccactccgggggcggccctg
agttggcaggcggccatcgatgctgcacggcaggcaaaggcgatgggcaatgctgtgtcg
acccaagcagggcttgggtcgggaggcggcgggcccatctccacggctagctccacgcaa
cggaagagacaacactatagctccaagcccaagaaacagacaacgacgacagccacaagg
ccgccacgggccctactctgtcttacgctcaagaaccccatccgcagggcctgcatcagc
atcgtagagtggaaaccatttgagatcatcatcctgatgaccattttcgccaactgtgtg
gccttagccgtctacatccccttccctgaggatgactcgaacgccaccaactccaacctg
gagcgtgtggagtatctgttcctcatcattttcacagtggaggcgttcctgaaggtaata
gcctatggcctgctcttccaccccaatgcgtacctgaggaatggctggaatctgctcgac
ttcatcattgtagtcgtagggttattcagcgccatcttggagcaggccaccaagggggac
ggggccactcccatcggagggaaagcagcgggcttcgatgtcaaggctctgagggcattt
agagtactcagacccctcagactggtgtctggagtgccaagtttacaggtagtgttgaac
tccataatcaaagccatggttcctctgctccatatcgccctgctggtcctctttgtcatc
atcatctatgccatcatcggcctggagctcttcatgggcaagatgcacaagacctgcgct
catgagcatataggcaccatcgcagaggagaagcctgcaccatgtgcacctgccggggct
tatggtcgacactgtagtcagaacggaacagagtgcaaagtgggatgggagggcccaaac
gacggcattaccaacttcgacaactttgcctttgctatgttaacggtgttccagtgtata
accatggaaggctggacggacgtgctatactggatgcaggatgctatgggctatgagctg
ccgtgggtctattttgtctctctcgtcatcttcggctcctttttcgttctcaatctcgtt
ctgggggtgttgagcggagagttttccaaggagagggagaaagccaaggctcgcggtgac
ttccagaaactcagagaaaaacagcaactggaggaggacctcaagggctatttagactgg
atcactcaggctgaagacattgacccagagaatgaggaggagggcatggatgatgataaa
cccagaaatcgtcagaaccatcgttttcactctctgcgtggagctatgaagagaaatgca
gctttccttctgagcatgccagccagtgagaatgaatcagtcaacacagacaatgccccc
gggggagacgtggagggtgagacctgctgtacccggctagcaaataggatctccaaatcc
aagttcagccgctactctcgaaggtggaacaggctatgcagaagaaagtgccgggcggcg
gtcaaatctcaacttttctattggctggtcatcttcctggttttcctcaacacactcacc
atcgcctctgaacatcaccagcagcctcagtggttaacggaagtacaggacatagccaat
aaggtgttgctagcactcttcactggtgagatgctgttgaagatgtacagtctgggccta
caggcgtacttcgtttcgctctttaaccgctttgacagctttgtagtatgtggaggaatc
ctggagaccattctggtggagaccaaggtcatgtctcctctcggcatctctgtgttacgt
tgtgtgcgcttgctacggatcttcaaaataacaagatactggaactcactgtccaacctg
gtggcctccctgctaaactctgtccgctccatcgcttcgctgttgctcctgctcttcctc
ttcatcatcatcttctccctgctcggcatgcagctctttggggggaaattcaacttcgac
gagaccagacgcagcaccttcgacaactttccccagtctctgctcaccgtgtttcagatc
ctaacaggagaggactggaactctgtaatgtacgatggcatcatggcgtatggcggaccg
tccttccctggcatgctggtctgcatctacttcatcatcctcttcatctgcggaaactat
atcctgctgaatgtcttcttggccatcgctgtcgacaatctggcagacgctgagagcctg
acatctgcccagaaagaagaggaggaggagaaggagaggaagaaactagccaggctcgcc
agtccagagaaacgccacaataacgagaagccgcctctgaaggaggagaagaagaagaag
aagaagaaggagaaaatagagctgaagtccatcacttcagatggagagaccaacaccgct
actaagatcaacatggatgactacattggagatgagactgaagagaagaatccatatcct
gcaaacgattacataggtgacgaggatgacgaggagccagagatgccggtggggccgagg
ccgcgtccactttccgacgttcagctgaaggagaaggccattcccatgcctgaggctcgt
gctttcttcatcttcagccacaccaacaaattcagggttctgtgccataagatcgtcaac
cacaacatcttcaccaacctcatcctcttcttcatcctgctcagcagcatcagtctggca
gcggaggacccggtcaagaacgactctttcagaaaccagatcttgggctatgcagatcat
gtcttcaccggactcttcaccatagagatcattcttaagatgacagcgtatggagccttc
gtccacaaaggttcattctgtagaaactattttaacattctggacctggtggtggtcagt
gtgtccctcatctcctctggaatacagtccagtgccattaatgtggtgaagatcctgaga
gttctgcgagtgctcagacccctgagagccatcaacagagccaagggcctaaagcacgtg
gtgcagtgcgtgtttgttgccatcaggaccatcggcaacatcgtcatcgtcaccacgctg
ctccagttcatgtttgcctgtattggagtacaactttttaagggcaagttcttcttttgt
tcagacagctcgaaacagaatcaggcagattgcagaggttcctacatcatgtataaggac
ggagatgtggggaagcctgaaagagcccacagactgtgggagaacagtgactttaacttt
gatgacgtcctgcaaggcatgatggctctgtttgctgtgtctacctttgagggctggcca
gggttactgtaccgggccatagactctcacgccgaggatgtcggacccgtttacaactac
cgcgtggttatctccatcttcttcatcatctacattatcatcattgccttcttcatgatg
aacatcttcgtcggtttcgtcatcgtcacattccaggagcaaggagagcaagagtataag
aactgtgaactggacaagaaccagcgtcagtgtgtggaatatgccttgaaggcccgccca
ttgcgccgctacatccctaagaacccctaccagtacaaggtgtggtatgtggtcaactcc
acctactttgagtacctgatgttcacactcatcctcctcaacaccatctgtctggccatg
cagcatcatgggcagaccaaaaatttcaatgacgccatgaacatcctcaacatgctcttc
actggactcttcactgtggagatgatcctgaaactgattgccttcaaaccaagggggtac
tttagtgatccctggaatgtgtttgatttcctcatcgtaattggcagcataatagacgtc
attctcagtgagatcaacccagctgactcctcctcgtccccgtcctcctcctcttcgtcc
tcctcctcctcctcttcctcctctcacccccctgtggtaaggccaatggtacgctccgac
ggtaacctcgtccgcctcccttcctcttccaccatccctccatccctccatccttccacc
cctcctcccgctacgccgtacatgggactgcagaactctgaagagaacgccaggatctcc
atcaccttcttccggctgttccgcgtgatgaggctggtgaagctgctgtctcgcggggaa
gggattcggaccctgctgtggaccttcatcaaatccttccaagctctgccatacgtagct
ctgcttatagtgatgctattcttcatatacgctgtcatcggcatgcagatgtttggtaag
atagcgctgcgggaccacacgcagatcaacaggaacaacaatttccagacgttccctcag
gcagtgttgctgctgttcagatgtgcaactggtgaggcgtggcaggagatcatgctggcg
tgctcgcccaatcggccatgtgagaagggatcgaccaatgagaacagctcgccacacgag
gactgtggcagccagtttgccatcatttactttgtcagcttctacatgctctgtgccttc
ctgatcatcaacctgtttgtggctgtcatcatggacaactttgactacctgacgcgtgac
tggtcgatcctggggccgcatcatcttgacgagttcaagaggatctgggctgaatatgac
ccagaagccaaggggaggataaagcatcttgatgtggtgactctgctccggagaatccag
ccccccctcggctttggaaagctttgtccccacagagtggcctgcaagcgtctagtgtca
atgaacatgcctctgaacagcgatggaacagtaatgttcaacgccacactgtttgccctg
gtcagaaccgcactcaggattaagacggatggtaacctggagcaggccaatgaggaactg
agggcaatagtgaagaagatctggaagagaaccagcatgaagctcttagatcaagtagtg
ccccctgctggtgacgatgaggtaacagtcgggaagttctacgcaaccttcctcatccag
gaatatttccgcaagtttaagaagaggaaagaacaagggctggtggccaaggtgcctccg
aaaactgccctctctctgcaggcgggcctgcggacgttgcacgatattggtccagagatt
cggagggccatctctggagacctgactgtggaggaggagatggataaaggcctgaaggag
cctgtgtcggctgcatctgaggacgatatcttcagggtaaagcgaaccggtgggttgttc
ggcaaccacgtcaactactacaaccagagtgatggccgtgtgtccttcccacagtccttc
actacccagcgtcccttgcacatcagccagaagggctcaccttgcgaaggtgagagcccg
tcccatgagaagctcatggactcgaccactttcactccgtcctcttactcctcatcaggc
tcaaacgccaacatcaacaacgccaacaacaccggcatggtcggagttccaacccagggc
gtcagtcgattcccgagcccgactataagcactgtggacggacacacaggacagccgctc
acccccatcctgctgccaagatctgcgtggtgctttcctccaaagaggacgtgtttttat
gacaacctcatgcgctcggactcaagtgacagccgtctgccaatcatacggagaggggag
gattccacggaggagacgtatgatgagagctacgtggacgacatggagtaccacgaggat
gaccactcgctctcttctgacatgctcgtgtatcatgatgaaacatgtaagcagttgact
cccatggaggaaggagaggaggtagaggacagaagaggaggaggagggtggcagtctccc
aggagagtcttcctctgccccacttcactggggcggagatcgtccttccatctggagtgt
ctcaggagacagtcaaggccagacgtctcccagaagacagctgtgcccttacacctcgta
catcatcaggcgctggcagtggcagggttgagtcctctgttaagaaggagtcactcaccc
accctcttcagccggctgtgctccacgcctccagccagtcccacagcccatggcagtgat
gcctcctaccagcgagtgccctctctgaggctagagggctcaaactcccatgaaaagctc
aataccagcttaccctctgtcaactgtgggccctggtacagtgacagtaatgggaacagc
cgagggccgagtcccagtctcacccccagcggctcagtgtcctatcaaagagcacctcgg
ccggtgtcgctcacagtgccctcgctactgggaaaagactacagctcactgtctcatggc
agcgcaggcagtctggtggaggcggtgctaatatcagagggtttgggtcatttcgctcag
gacccgtcattcatcgaggcaaccaaagccgagttggctgatgcctgtgacatgaccatc
gaggagatggagcacgccgccaacaacattctcaacggcaacaacaccaccaccaccacc
acgaacgtcacgtccagcacctcctctaactcccagaacagccccaatggcaacctcctc
cccttccacacagaagcagcatcaatgcacagggaccgagtggacagcttgagtcccagc
gagggcgggggagaggcaggagggagcagaagctccgtccatgagctgtcctctatggag
gagcggcaggagctgctagcaggggggagaggacaggaggaggaggaggaggaggaggag
gaggaggaggaggaagaggcgggggaagaggcgggggagagggaggaggggcatcacaga
gcctcagatgtaattggagaaacgcggcagaggaacagcgggctgttggaagatgaggat
atggagtgtgtgacgagtttgtag
DBGET
integrated database retrieval system
