Hippoglossus hippoglossus (Atlantic halibut): 117759312
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Entry
117759312 CDS
T07778
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
117759312 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117759312 (cngb1a)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117759312 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
117759312
NCBI-ProteinID:
XP_034437270
LinkDB
All DBs
Position
3:complement(2015477..2035945)
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AA seq
1396 aa
AA seq
DB search
MLSWVVKVVPQPPEPPSKKVDEKKEEEPVAAPPPVQAPPQVAALPPDAPLRPAQEKKVTF
QDECKNEASKDPKNPEADKSKQEAEGNGSQPGVLTWISGALPQPAASPKLSRDSTTTTST
TTSTTTSTTTSTTPPATTSTTTSTTPPATEENPTASKPDDEKGMLAWFAQGLEKVVPQPD
LKNKDSAQVHPAAAAPAEPQANVRQDRDDTTDNKPFPPRMMDWIKQGMEKVVPQPEINVY
SKTDSNIKTEAPASTEAPPPEPPPPPKPAADTAKSSKEAEQQPESSKEAEQQPNMMGWIF
SGIGRMMPQPVQKQDTGCEVQNISIVQQRTDLVLEDVGPDEDAEAKNEEKKEKEDAENQP
TSSIKKEAGEAVLAHMDERVQQERLEEARVAEDIARKAAEEAVRQLEVEHSAKIVIETLP
ESNELPNILEEENEEDPECMLVVCPAQDDTEATTALDKVEAAAETIQPPTESKLPEEKTP
SSTDVEPASKRRDPESPVSQPVTQQPQPQAPQGSKAAADEGGCGVPDLCSPVQSFLLRIP
RAAECLRSCRKQMHDNYLLLPKLSMPTPPPELAQLTQELSQFRKQAQQFIVSHLSRVCSQ
HPQQPCQTNPCVWRCPLTSSPLPDITSMMLHSSTANHTPAPTLKVEDVDQDVRQGKGLNI
PHIMTTPEPESTALTVPNVPLSKLSSADENDDELMRTDLRTWPSPGDLLTADDEMRPLSA
ASVGSVVIQDRLSDLVKLFRGRTERQKDRLVDPDESEGESPSASPSKAPPPPPPAEEKKE
EAAAEKEEEEDEEEEEAVFQFKLLGHPVEIPKLLKLPPMPDWLRAIVEYRFPSSIDQFTD
LIYVIWLFFVVAAWNWNMWLIPVRWAFPYQTPENIHLWLLADYTCDLIYITDILVFQPRL
QFVRGGDIVCDKKDMRENYMTTERFKMDVISLFPMEIFYYFTGVNSLLRFPRLLKYMVFF
EFNDRMEAVMKKAYIYRVIRTSMYLLYSLHINACLFYWGSDYEGLGSTKWVYNGKGNAYI
RCYYFAVKTLITIGGLPDPTTVFEICFQLINYFVGVFAFSIMIGQMRDVVGAATAGENYY
RACMDSTVKYMNSYNIPRDVQNRIKTWYDYTWKIQGMLDEQELLIQLPNKMRMDIAVDVN
YAIVSKVALFQGCDRQMVFDMLTRLKSVVYLPGDFVCKKGEIGREMYIIKQGEVQVVGGP
DLQTVFVTIRAGSVFGEISLLAGGGGNRRTANVKAHGFANLFILDKKDLAEILVHYPESQ
KLLRKKAKKMLTKDTKPDEKEGGKGAVEVIPPRPDTPQMFKAALKVAEQAGIEGTFIKLK
KAYKASQSTEASSSISPLPPPSPRHHRSPIPHFLVKDEDDAVTETADSSVIIRMTPRQEG
EEVLSVEVLPKEGGKK
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctgggtggttaaagtcgttcctcagccgcctgagcctccttccaaaaaagtc
gatgagaagaaggaggaggaaccagtcgcagccccgcccccggtacaggcccctccccaa
gtcgcagctcttcctcctgatgcacccctacgacctgcacaagagaagaaagtgacgttt
caggatgagtgtaaaaacgaagcttcaaaagatccgaagaatccagaagctgacaaatcc
aaacaggaagcagagggcaacggctctcagcccggcgtgttgacgtggatcagcggagct
ctgcctcaacctgcagcctcacccaaactgagccgggacagcaccaccacgacctccacc
acgacctccaccacgacctccaccacgacctccaccacgccccctgccacgacctccacc
acgacctccaccacgccccctgccacggaggaaaacccaacagccagtaaacctgacgat
gagaaagggatgttggcgtggttcgctcagggtttggagaaagttgttcctcagcctgat
ttgaagaacaaagactctgctcaggtgcatccggcagcagctgctccagcagagcctcag
gctaatgtgcgacaagacagagacgacacaactgacaacaagcctttcccacccaggatg
atggactggataaaacagggtatggagaaggtggttcctcagccagagatcaatgtttac
tcaaagacagacagcaacatcaagactgaagctcctgcttccactgaagctccacctcca
gaaccaccacctcccccaaaaccagcagctgacactgcgaagtcgtccaaagaagcagag
cagcagcctgagtcgtccaaagaagcagagcagcagcctaatatgatgggctggatcttc
agtggcatcggtcgcatgatgcctcagcctgtgcagaagcaggacacaggctgtgaagtg
cagaacattagcatcgtgcagcagaggacagacctggtgctggaggacgtaggaccagat
gaggacgcagaggcgaagaacgaagagaagaaggagaaagaggatgcagagaaccaacca
acttccagcatcaagaaggaggcaggagaagcagttctcgctcacatggatgaaagagtg
cagcaggagcgtctggaggaggcccgggtcgcagaggacatcgccaggaaggcagcggag
gaggcagtccgccagctggaggtggagcattcagctaagattgtgatagaaaccctgcca
gagtccaacgaactgcccaacatcctggaggaggaaaatgaggaagaccctgagtgcatg
ctggtcgtctgtccagctcaagatgatactgaggctacgactgcactggacaaagtcgag
gctgctgcagagacaatccaaccgcccaccgaatccaaactaccggaggaaaagactcca
tcgtcgacagatgtggaaccagcatcgaagaggagagacccggagagtcccgtctcacag
ccagtcacccagcagccacagccacaagctccacagggcagcaaagcagcagcagacgaa
ggggggtgcggagttcctgacctttgctctccagtacagagctttctgcttcgaatccct
cgcgctgccgagtgtctgaggagctgcaggaagcagatgcatgacaattacctcctcctt
cctaagctatccatgccgaccccaccgccggagctcgcccagctgacccaggagctgtcg
caattccgcaagcaggcgcaacagttcatcgtcagccacctcagccgcgtttgctcccag
catcctcagcagccttgccaaacaaacccttgtgtctggaggtgtcccctaacatcctcc
cccctccctgacatcacttccatgatgctccacagctctacagctaaccacactccagcc
ccgacgctgaaggtggaggatgtggatcaggatgtgaggcagggaaaaggcctgaacatc
ccccatattatgacaaccccagaaccagagtccactgctctgactgtccctaatgtgccc
ctgtccaaactcagttctgcagatgagaatgatgatgagctgatgaggactgatctcagg
acctggcccagtccgggagatctactgactgcagatgacgagatgcgtcctctgtcagct
gccagcgtcggcagcgtcgtgatccaggatcgtctgagcgatcttgtcaagctcttcaga
ggtcgaactgagcgtcagaaagaccgactggtggacccggacgagtcggagggagaaagt
ccatcagcctccccgagcaaagctccacctccccctcctccagcagaggagaagaaggaa
gaagctgcagcagaaaaagaagaagaagaagacgaagaagaagaagaggcagtgttccag
tttaaacttctgggccacccagtagaaattcccaaactgctcaaacttcccccgatgccc
gactggctccgagccatcgttgagtaccgcttcccctccagcattgaccagttcaccgac
ctgatctatgtgatctggctgttcttcgtggtggcagcgtggaactggaacatgtggctg
attccggtccgctgggcgttcccctaccaaacccccgagaacatccacctgtggctgctg
gccgactacacctgcgacctcatctacatcacagacatcctcgtgttccagcccagactg
cagttcgtccgtggaggagacatcgtgtgtgataaaaaggacatgagagaaaactacatg
acgaccgaaagatttaagatggacgtcatcagtctgtttccgatggagatattttactac
ttcacaggcgttaactctctgctgaggttccctcgtctgttgaagtacatggttttcttt
gagttcaacgacagaatggaagctgtgatgaagaaagcctacatctacagggtgatccga
acctccatgtacctgttgtactctctgcacataaacgcctgtctcttctactggggctcg
gactacgagggattgggatccaccaaatgggtttataatggaaaaggaaatgcgtacatc
cgttgttactactttgccgtgaagacgctgatcaccatcggaggtctgcccgaccccacc
accgtcttcgagatctgcttccaactcattaactactttgttggtgtctttgctttttct
atcatgatcggtcagatgagagatgtggtgggagcagcgacagccggtgagaactattac
cgggcctgtatggacagcaccgttaagtacatgaactcgtacaacatcccccgagacgtt
cagaaccgcatcaagacctggtacgactacacctggaagatccagggcatgctggacgaa
caggagctgctgattcaacttcctaataagatgagaatggacatcgctgtggacgtcaac
tacgccatcgtcagtaaagtcgccctttttcagggctgtgacagacagatggtgttcgac
atgctgacgaggctcaagtctgtcgtttacctgcccggagactttgtctgtaaaaagggg
gagatcggcagggagatgtacatcattaaacagggggaggtccaggtggtgggcggtcct
gacctacagactgtgtttgtcaccatcagagccggctcggtgttcggagagatcagtctg
ttggcgggaggtggagggaacagacgaactgccaacgtaaaagctcacggattcgctaac
ctcttcatcctggataagaaagatctggcagagatcctcgttcactacccagagtcccag
aagctgctccgcaagaaggcgaagaagatgttaacgaaggacacgaagccggatgagaag
gagggaggtaaaggggcggtggaggtcatcccaccacgaccggacaccccccagatgttc
aaggcggcgctgaaggtggcggagcaggcgggaatagagggaaccttcatcaaactgaag
aaggcctacaaagcgtcccagagcacagaggcttcctcctccatctctccactcccgcct
ccctctccgaggcaccaccgctctccaatccctcacttcctggttaaggacgaagacgac
gcggtgacggagacagctgacagctccgtcatcatcaggatgacgccgcgacaggaaggc
gaggaggtgctgtctgtggaggtgctgcccaaggagggaggaaagaagtga
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