Hippoglossus hippoglossus (Atlantic halibut): 117760565
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Entry
117760565 CDS
T07778
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K08131
collagen type IX alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117760565
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117760565
09142 Cell motility
04820 Cytoskeleton in muscle cells
117760565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hhip00535
]
117760565
Proteoglycans [BR:
hhip00535
]
Extracellular matrix (ECM) proteoglycans
Others
117760565
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117760565
NCBI-ProteinID:
XP_034439578
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Position
4:complement(13868083..13874600)
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AA seq
636 aa
AA seq
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MQGADVLLLLLLSCGTIQQMIFVVGDPAAAEQHCQHYNNTCSTLTDTQQATAVDEVTSHP
GIRESSRPDTSPQDTTVKAGLPELTGRLNPESSTSPLKTHTAQTGAETQTTGSTTGEKPK
TVGEETVLGGANEPQTSQISGTMKETQRTEGSLTVASVHTAHTAQVHQPSGAATEGFTSN
DASVVEPVEMSISSPNIQPENPTAPGVTSPSAGGATETAERSFSDGPHEFVITLISGSTT
ESGFDAASVDASPDGGTKEAKQDTSPAIITPPVSVVTHPSLEVLAAAEEDRSVEGEVTQD
FAAPQKVPAPNLTLSAPTQQSTAALSNIPTEGGNVSAQTETTSPPLRLPGGEEGSGRDED
ETDSVMEEEEEREAEVEKANHDNDTGIFEENNQSSLDSISMFSDEDFIVISETESPQQNV
KAANQQPASSVRHHGAGLKPGVRGQRGLQGPPGLTGPSGPQGDKGYQGVMGRTGGTGYRG
PIGPPGMPAIVVFKTSEEGWEAFKKKKIYKKLVFSWPVGVCVKEQMVLSFLKKLRGLWGL
LDLLEMPDQSGHLELLGNKDQEELQGKWVVQGHRVCRGPRADPEEMGPQERTLTQALQAY
LENRVMKERLDHKETEDEQETREIKESEALLGSLAT
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcagggggctgatgtgctgctgctgctgctgctgagctgcggaaccatccagcagatg
atctttgtcgtgggagatcctgcagcagccgagcagcactgtcaacattacaacaacaca
tgctcaacactgaccgacacacagcaggctacagcagtagatgaggtgacttctcatcct
ggcattagagaatcatccagaccagacacttcccctcaggacacaactgtgaaggccgga
ctccctgagctgacagggagactgaatccagagagcagcacctcccctctaaagacacac
actgctcagactggtgcagaaactcagactacaggctcaaccacaggagaaaaaccaaag
actgtgggtgaggagacggttctaggtggagctaacgagccgcagacatcacaaatatca
gggacaatgaaggagacacagagaacagaagggagtttgacagtcgcttctgtccacaca
gctcacactgctcaagttcatcagccatcgggtgcagcaacagagggcttcacaagtaat
gatgcatctgtggtggagccagtcgagatgtctatttcaagcccaaacatccaacctgag
aaccccacagctccaggcgtcacttcaccatccgcagggggagcaacagagactgcagag
agaagtttctctgatgggcctcatgagtttgtcatcactctgatctcaggctccaccaca
gaatcagggtttgatgctgccagtgtggacgcttcacctgacggaggaacaaaggaggcc
aaacaggatacttcaccagcaataattacacctccagtttctgtagtcactcatccctcc
ctggaggttttagcagcagcagaagaagacagatcagtggagggagaggtgacacaagac
tttgctgctcctcagaaagttccagctccaaatctgacgctttcagctcccacacaacaa
agcacagcagcactgagtaacatcccaactgaggggggtaacgtttcagcacaaacagaa
accacatcaccaccgctacgacttccaggtggagaagaggggagcggcagagatgaagat
gagacagattcagtgatggaggaggaggaggaaagagaagcagaggtggaaaaagcaaat
catgataatgacaccggcatctttgaggaaaataatcaatcttcacttgattcgatctcc
atgttcagcgatgaagacttcatagtcatatcagagactgagtcgccacagcagaatgtt
aaggcagccaatcagcagcctgcatcctcagtcagacatcacggggccggactaaaacct
ggggtcagaggtcaaaggggactacagggtccacctggactaacagggccatcaggacct
caaggagacaaaggatatcaaggtgttatgggcaggaccggggggacaggatacagaggc
cccattggtcctccagggatgcctgccattgttgtattcaaaacctctgaggaaggatgg
gaggctttcaagaaaaagaagatctacaaaaagctggtgttttcctggccagtaggtgtt
tgcgttaaagaacaaatggtgttgtcgttcctgaaaaagttaaggggcctctggggcctc
ctggacctcctggagatgccggaccaatcgggccacctggaattactgggaaacaaggac
caagaggagctccagggaaaatgggtagttcagggccacagggtctgccggggccccagg
gccgacccggaagagatgggaccccaggaaaggacgctgacccaggccctccaggcttac
ctggagaacagggttatgaaggagaggctggaccacaaggagacagaggacgaacaggag
acaagggaaataaaggagtcagaggccttgttgggctccctggctacatag
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