Hippoglossus hippoglossus (Atlantic halibut): 117761614
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Entry
117761614 CDS
T07778
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117761614 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117761614 (tardbp)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117761614 (tardbp)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
OB_RNB
Motif
Other DBs
NCBI-GeneID:
117761614
NCBI-ProteinID:
XP_034441557
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Position
5:12275670..12281381
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AA seq
404 aa
AA seq
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MAEVYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
ILHAPENGWGNVVYVVNYPKDNKRKMEEIDASSAVKMKRGDMKTSDLIVLGLPWKTSEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTEYESQEKVISQRHMIDGRWCDCKLPN
SKVNLGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTFADD
QVAQSLCGEDLIIKGVSVHISNAEPKHGNRQFDRTTRFGNGFGAQAFGSSRSGLGSSTNS
SLANFGSFSLNPAMMAAAQAALQSSWGMMGMLASQQQTSTSGSTSSGTSSSRDQSQSFST
GNSNYGTGSASLGWGTGSNSTTSGSGFSSGFGSSMESKSSGWGM
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagtatacattcgagtagcggaggaggaaaatgaagagcccatggagatcccg
tccgaggacgacggcaccgtcctgctctccaccgtggccgctcagttccccggggcgtgc
ggcctgcggttccggagccccgtgtcccagtgcatgcggggggttcgtcttgtggaaggg
atcctgcacgcaccggagaacggatggggcaacgtcgtgtatgtggtcaactatccaaaa
gacaacaaaagaaaaatggaggaaatagatgcctcctctgctgtgaaaatgaagcgaggc
gatatgaagacgtctgacctgattgtactgggtttaccgtggaaaacgtccgagcaggac
ctgaaagactacttcagtacatttggagaagtcatcatggttcaggtaaaacgagatgcc
aagacaggaaactctaaagggttcggctttgtgaggtttacagagtacgagtctcaagaa
aaggtgatatcccagcgccatatgattgatggcagatggtgcgactgcaagcttcctaac
tcgaaggtgaatctgggtccggatgagccactgaggagtcgcaaagtttttgtaggccgt
tgcacagaagacatgaccacagacgacctgcggcagttctttatgcagtacggagaagtg
acagatgtcttcattcccaagccattccgtgcttttgcttttgtgacatttgcagacgat
caggttgcccagtctctctgtggagaggacctaattattaaaggtgtcagtgttcacatc
tcaaacgctgagcccaaacacggcaataggcagtttgaccgcacaacaaggtttggtaat
ggtttcggagcacaagcatttggtagcagccgtagtgggttagggagcagcactaacagt
agtctggctaattttggttctttcagcttgaacccagccatgatggcggccgctcaggct
gctctgcagagtagttgggggatgatgggtatgctagctagccagcagcagacgtccacc
tcaggcagcacctccagtggaaccagctcgagcagggaccagagtcagtctttcagtaca
ggaaacagcaactatggcaccggctcggccagtcttggctggggaacagggtcaaactca
acaaccagtggtagtggctttagctcaggttttgggtccagtatggagtcaaagtcatct
gggtggggtatgtaa
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