Hippoglossus hippoglossus (Atlantic halibut): 117773803
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Entry
117773803 CDS
T07778
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117773803 (scn1lab)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117773803 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
PFF1_TM
Spem1
New_glue
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
117773803
NCBI-ProteinID:
XP_034461466
LinkDB
All DBs
Position
2:8413844..8439974
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AA seq
2037 aa
AA seq
DB search
MAQLLVPPGPDSFLPFVPESLAAIERRIAEEEARRPRAERRSDSDDENGPKPNSDLEAGK
SLPFIYGDTPSHLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLRR
IAIRVLVHSLFSILIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
LGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRYPFTSNATNSSNVTSDDDDM
FFNNSLMDINTTFVQNATENPFNWTEYISDPDNYYYLPGRRDALLCGNGSGAGLCPEGFT
CMKAGRNPDYGYTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLG
SFYLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGE
YSGRGGPTAESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGVRKFHKSESEDSIKRSS
FRFSVDANRLSYEKRCSSPNQSLLSIRGSLLSPRRNSRASLFSFRGRARDMGSENDFADD
EHSTFEESDSRRGSLFLPRRLERRCSAVSQTSLGAPRVMLPANGKMHCAVDCNGVVSLVG
GTSVTTSPVGLLLPEGTTTDTELKKRRSGFHQPSMDYLDEPVGRQRAMSVASILTNTMEE
LEESRQKCPPCWYRFANTCLIWDCYPEWLKIKEVVNMVVMDPFVDLAITICIVLNTLFMA
MEHYPMTKEFNTVLLVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLME
LGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAV
VGMQLFGKSYKEFVCNISDDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQS
MCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFI
KSAVRQFLQSHCFGGGSKGSGLTEESKPLDELHSNGKGNCISNHTTLEITKEPSRVYMTE
GNGRPGGGLVVGVRDTVVKYPIEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSD
SSDVEGSKETRQFNLSSSSRPVQKLDTEPKRLSSSEGSTVDIRPPGDGVDSVELEPEESM
EPEACFTEGCVSKFQCCQINEDNDHYKNWWNLRKTCFIIVEHNWFESFIIFMILLSSGAL
AFEDVYIEQRRTIKTMLEYSDKVFTYVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVS
LVSLVANTMGYSELTAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCL
IFWLIFSIMGVNLFAGKYYYCVNTTSDEVFPIHIVNNKTDCLNLINDSGRWKNVKINFDN
VGAGYLALLQVATFKGWMDIMYAAVDSRDLEDQPKYEVNLYMYLYFVIFIIFGSFFTLNL
FIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDC
ITKQAFDIVIMILICLNMVTMMVETDDQTKEMDDILYLINMVFIVLFTGESVLKMISLRH
YYFTIGWNIFDFVVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIR
TLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKRESGIDDMFNFETFGNSMICL
FQITTSAGWDSLLAPILNKREPDCDSRMEHPGNNYKGNCGNPSVGIFFFVSYIIICFLIV
VNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPGATQFMEYSKLSDFADALDP
PLRMPKPNMIHLISMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASN
PSKVSYEPITTTLRRKQEDMSAVIIQRAFRRYMICLAMKKASTLYKEKLKEGIRDPDKDV
MVISKFTENSTSDKTDMTPSTASPPSYNSVTKSDKDKYEKENREKENKGKDSKERKK
NT seq
6114 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttcctccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccacgggcggagcgc
cgcagcgacagcgatgatgaaaatgggccgaagcccaatagtgacctggaggcggggaaa
tctctccccttcatctatggggacaccccctcccacctggtgtccacccctctggaggac
ctggataccttctacagcaatcagaagaccttcatagtattgaatcgggggaaggcaatc
ttccgtttcaatgccactcctgccttgtacatcttaagccccttcaaccccctaaggagg
atagctattagagttttagtacactctttgttcagcatcttgatcatgttcactatcctg
accaactgtgctttcatgaccctcagtaatcccccggaatgggccaagaatgtagaatac
acattcacagggatttacaccttcgagtcccttataaaaatcctggccaggggcttctgt
ctggggaagttcactttcctgcgggacccgtggaactggctggatttcagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccctgaaaactatatcagtcatcccaggcctgaagaccattgtgggcgca
ctgatccagtcggtaaagaagctgtcggacgtgatgatcctcacggtgttctgcctcagc
gtcttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgtgtgcgt
tatccgtttaccagcaacgccaccaacagcagcaacgtaaccagtgacgacgacgacatg
tttttcaacaactccctgatggacatcaacactacgtttgtgcagaacgccacagagaac
cccttcaactggacggagtacatcagcgatccggataattactattacctccctggacgc
agggatgctctgctctgtgggaacggcagcggtgctgggctctgcccagagggtttcacg
tgtatgaaagcgggtcgtaatccagattacggctacaccagcttcgacaccttcagctgg
gccttcctctctctgttccgactcatgacccaggacttctgggaaaacctctaccagcag
actttgcgtgctgcggggaaaccctacatgatcttcttcgtgctggtgatcttcctgggc
tccttctacctggtcaacctgatccttgccgtggtggccatggcgtacgacgagcagaac
caggcgaccatcgaggaggcgcagcagaaggaggaggagttccaggccatgctggagcaa
ctgaagagacagcaggaggaggcacaggttgccgcagcagcagccacagagagcggcgag
tacagcgggagagggggccccaccgccgagtcctcctcggggacgtctaagctgagctcc
aagagtgccaaggagcgacgcaacaggcggaagaagaggaagcagagggaagaggaggag
gagaggggggtgcgcaagttccacaagtcagagtccgaggacagcatcaagcgctccagc
ttccgcttctctgtggatgccaaccgcctctcttatgagaagagatgctcctcgcccaac
cagtctctcctcagtatccgagggtccctgctgtctcctcggaggaacagccgcgccagc
ctcttcagctttcgcggccgggcgcgcgacatgggctccgagaacgacttcgccgacgac
gagcacagcaccttcgaggagagcgacagtcgccgcggctccctgttcctgccgcgccgc
ctcgagcgccgctgcagcgccgtcagccagacgagcctcggggcgcctcgggtcatgctg
cccgccaacgggaagatgcactgcgccgtcgactgcaacggcgtggtgtcgctggtcggt
ggaacgtctgtaacaacctcccctgtaggtctcctgctgcctgagggaacaacgacagac
actgagttaaagaaacgccgatcaggatttcaccagccgtccatggattatctggatgaa
ccagtgggtcggcagagagccatgagtgtggccagtatcctcaccaacaccatggaagag
cttgaagagtcgagacagaagtgccccccctgctggtatcgatttgccaacacctgtctg
atctgggattgttatccggagtggctgaaaatcaaggaggtggtcaacatggtggtcatg
gaccccttcgtggatctggccatcaccatctgcatcgtgctcaacaccctgttcatggcc
atggagcattaccccatgacgaaggaattcaacactgtgctcttggttggaaacctggtg
ttcaccggtatcttcacagcggagatgtgtttcaagatcatcgccctggatccctactac
tacttccaggagggctggaacatctttgacggcatcatcgttagtctgagtctgatggag
ctcggcctggccaacgtggaaggcctgtctgtgctccgctccttcagactgctgagggtc
ttcaaactggccaagtcgtggcccaccttgaacatgctgattaagatcatcggtaactcg
gtgggcgctctggggaacctgacgctggtgctcgccatcatcgtcttcatcttcgccgtg
gtgggcatgcagctgtttggcaagagctacaaggagtttgtgtgcaacatctccgacgac
tgtcagctgccgcgctggcacatgcacgacttcttccactccttcctcatcgtgttccgg
gtgctgtgtggagagtggatcgagaccatgtgggactgcatggaggtggcagggcagtcc
atgtgcctgatagtcttcatgatggtcatggtcattggaaaccttgtggtcctaaacctg
ttcctggctctcctcctgagctcattcagcgctgacaacctggcagccactgacgacgac
agcgagatgaacaacctgcagatcgccgtgggccgcatccagcggggcatcgcgttcatc
aaatctgccgtgcggcagttcctccagagccactgcttcggcgggggcagcaagggatcc
ggtctgaccgaggagagcaaacccctggacgaactgcacagcaacggcaaaggcaactgt
atctctaatcacaccacactggagatcaccaaagagcccagtagggtgtacatgacagag
ggcaacgggcggccaggaggggggctggtggtcggggtcagggacacggtggtgaagtac
cccatcgaggaatgtgactacatgtcatttattcacaaccccagcctcacggtcactgtg
cccatcgctgtgggcgagtcagactttgagaacctgaacacggaagatttcagcagcgac
tcgtcggacgtggagggcagcaaggagactcggcagtttaacctctcatcttcttcccgg
cccgtgcagaagctcgacacagagcccaagcgtctgagctcatcggaggggagcacggtt
gatatccggcccccgggagacggggttgactcggtggagctggagccggaggagtctatg
gaaccggaggcctgcttcacagagggctgtgtgagtaagttccagtgctgccagatcaac
gaggataacgaccattataagaactggtggaatctgaggaagacctgcttcatcatagtg
gagcacaactggtttgagtccttcatcatatttatgatcctgctcagcagtggggcgctg
gcattcgaggacgtttacatcgagcagcggaggaccatcaagacgatgctggagtactcg
gacaaggtctttacttatgtcttcatcctggaaatgctgctgaagtgggtggcatacggc
ttcgtcaagtacttcaccaacgcctggtgctggcttgacttcctcatcgtagacgtgtcc
ctggtgagcctcgtagccaacactatgggctactcggagcttaccgctatcaaatctctg
aggacgctacgagccctccggcccctgagggccctgtctcggtttgagggcatgagggtc
gtggtgaacgcgctgctgggcgccatcccctccatcatgaacgtgctgctggtctgcctc
atcttctggctcatcttcagcatcatgggtgtcaacctgttcgcggggaagtactactac
tgcgtcaacaccacctcggacgaggtcttccccatccacatcgtcaacaacaagacggac
tgcctgaacctgatcaacgacagcggccgctggaagaacgtcaaaatcaactttgacaat
gtgggggccgggtacctggctctgctgcaagtggcaacgtttaagggttggatggacatc
atgtacgcagccgtggactctcgagacttggaagatcagcccaaatatgaagtgaacctg
tacatgtacctctactttgtcatcttcatcatcttcggctccttcttcaccctcaacctg
ttcattggtgtcatcatcgacaacttcaaccagcagaagaaaaagtttggaggtcaggac
attttcatgactgaagaacagaagaaatactacaacgccatgaagaagctgggctccaag
aaaccacagaaaccgatacctcgaccgacaaacgctttccaaggctgcgtgttcgactgc
atcacaaagcaggcgttcgacatcgtcatcatgatcctcatctgcctcaacatggtgacc
atgatggtggagaccgacgaccagacgaaggagatggacgacatcctctacctgatcaac
atggtcttcatcgtgctcttcactggggagagcgtgctcaagatgatctccctgcgtcac
tattacttcacgattggctggaacatatttgactttgtggtggtgatcctgtccatcgtg
ggaatgtttttatccgaagttatcgagaaatactttgtgtccccaacgctgttccgagtg
atccgtctggccaggataggccgcatcctccgtctcatcaaaggcgccaagggcatccgg
acgctcctcttcgccctcatgatgtcgctccccgccctcttcaacatcggcctcctcctc
ttcctcgtcatgttcatctacgccatcttcgggatgtccaacttcgcctatgtcaagcgt
gaatcaggaatcgatgacatgttcaatttcgagaccttcgggaacagtatgatctgtttg
tttcagatcaccacctcagccgggtgggacagcctcctggcgcccatactgaacaaacgg
gagcccgactgcgacagccggatggagcacccgggcaacaattacaaaggcaactgcggc
aacccgtcggtgggcatcttcttcttcgtcagctacataattatctgctttctcatcgtg
gtcaacatgtacatcgccgtcatcctggagaacttcagcgtggccacggaggagagcgcc
gagccgctgagcgaggatgacttcgagatgttctacgaggtgtgggagcgcttcgatcca
ggcgccactcagttcatggagtacagcaagctttctgactttgcagacgctctagacccg
ccgctgcgcatgcccaagcccaacatgatccatctcatctccatggatctgccgatggtg
agtggcgagcgaatccactgtcttgacatcctgttcgccttcaccaagcgcgtgctgggc
gaaggcggcgagatggacgtgttgcgcgggcagatggaggagcgcttcatggcctccaac
ccctctaaggtgtcttacgagcccatcaccaccaccctgcgccgcaaacaagaggacatg
tcggctgtcattatccagagagccttccgccgctacatgatctgtctggccatgaagaag
gcgtccaccctctacaaggagaagctgaaggagggcatccgcgaccccgacaaggacgtg
atggtcatcagcaagttcactgagaactccacctcggacaaaacggacatgacgccgtcc
acggcctccccgccctcctacaacagcgtgacgaaatcggacaaggacaaatacgagaag
gagaacagggagaaggaaaacaaaggaaaagactcgaaagaacgaaagaaatag
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integrated database retrieval system
