Herbaspirillum hiltneri: F506_00825
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Entry
F506_00825 CDS
T04039
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hht
Herbaspirillum hiltneri
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hht03016
]
F506_00825
Enzymes [BR:
hht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F506_00825
Transfer RNA biogenesis [BR:
hht03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F506_00825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AKZ61401
LinkDB
All DBs
Position
182420..184477
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AA seq
685 aa
AA seq
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MNLFFEESGDFKAGAVLSQQGEAYQVELASGKRTKVKSKDVMLQFASPAPARLLEDAQAV
AQDIDLDFLWEVAGEDEFGFAELGAEYFGHAPLPHEAAGLLLRLHSAPIYFYKKGKGRYK
AAPLASLQAAQAGLEKKKQQALVQAQYVDELKAGKLPDAFKPLALSLLFRPDKNGIEFKA
LDAACKELQTTPQRLMLQTGGLASPKDLHYAKFLFEFFPKGSGFPDVTIPAVPKDLPLAD
VQAFSIDDVTTTEIDDALSVVRLADGNVRVGIHIAAPGLGIKRDDALDAIARQRMSTVYM
PGEKITMLPDVLVEAFTLDAGKSCPALSLYATLNPADWSVISTETRAEMVPISANLRHND
LDALVTEEALANNSGEYPHKDDITLLWQWVQVLEQGRMAKRESFGLRPEQNNRVDFNFYV
DDDVVTITRRKRGAPLDKIVAELMIFANSTWGKFMADHGVPGIYRAQGGGAGGWAAKMQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACLEHGVTAPLAAPFKPRDADLF
AIVSGFDSAYSGYADFQSGMERYWCLRWLAQEQARQVDAVVLKDEVLRLVDIPLVIRLPG
MPQVARGLQVKLDLLRWDEVDLTVEARLLDVPAVQPATGAEQMDEDEEALLDGMESAAEG
ADASVVDEAEPVAGEQTAGAPSAAE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaatttattttttgaagaatccggcgatttcaaggctggcgccgtgctgtcgcagcaa
ggcgaggcctatcaggtcgaactggcttccggcaagcgcaccaaggtcaagtccaaggac
gtgatgctgcaatttgcatcgccggcccctgccaggttgctggaagacgcgcaagcggtc
gcgcaggacatcgacctcgatttcctgtgggaagtcgcgggcgaggacgagttcggcttc
gccgaactgggcgctgaatatttcggccatgcgccgctgccgcacgaggcggcaggtctg
ctgttgcgcctgcattcggcgccgatctatttctacaagaagggcaagggacgctacaag
gcggcaccgctggcttcgctgcaggcggcccaggcaggcctggaaaagaagaagcagcag
gcgctggtgcaggcgcaatacgtcgacgagctgaaggccggcaagttgccggacgcgttc
aaaccgctggccttgtccttgctgttccggcccgacaagaacggcatcgaattcaaggcc
ctcgacgccgcctgcaaggaattgcagaccacgccgcagcgcctgatgctgcagaccggc
ggactggcttcgcccaaggatttgcattacgccaaattcctgttcgagttcttcccgaaa
ggcagcggcttccctgacgtgacgatccccgccgtgcccaaggatttgccgctggccgac
gtgcaggcgttctccatcgatgacgtcaccacgaccgaaatcgacgatgcgctgtcggtg
gtcaggctggccgacggcaacgtccgcgtcggcatccatatcgccgcgcccggcctcggc
atcaagcgcgacgatgcgcttgacgcgatcgcgcgccagcgcatgtcgactgtctacatg
cccggcgaaaagatcaccatgctgcccgacgtgctggtcgaagccttcacgctcgacgcc
ggcaagagctgcccggcgctgtcgctgtacgccacgctcaacccggccgactggtccgtg
atctccaccgagacgcgcgccgagatggtgccgatttccgccaacctgcgccacaacgat
ctcgacgcgctggttaccgaagaggcgctggcgaacaacagcggcgagtatccgcacaag
gatgacattacgctgctgtggcaatgggtgcaggttctcgagcaagggcgcatggccaag
cgcgaaagtttcggcctgcgtccggagcagaacaatcgcgtcgatttcaacttctacgtt
gacgacgacgtcgtcaccatcacgcgccgcaagcgcggtgcgccgctcgacaagatcgtc
gccgagctgatgatcttcgccaacagcacctggggcaagttcatggccgaccacggcgtg
ccgggcatctaccgtgcacagggtggcggcgccggaggctgggccgccaagatgcaggtg
cgcatggtcacgcacgccgcgccgcaccaggggctgggcgtggatcaatatgcgtggagc
acgtcgccgctgcgtcgctataccgacctggtcaatcaatggcagatcctggcctgtctc
gagcatggcgtgaccgcgcctctggcggcgccgttcaagccgcgcgacgccgacctgttc
gccatcgtctccggcttcgactcggcgtattccggttatgccgacttccagtccggcatg
gagcgctactggtgcctgcgttggctggcgcaagagcaagcgcgccaggtcgacgccgtc
gtgctcaaggacgaagtcctgcgcctggtcgatatcccgctggtgatccgtctgccgggc
atgccgcaggttgcgcgcggcctgcaggtcaagctcgatctgctgcgctgggatgaagtt
gacctgaccgtggaagcgcgcctgctggacgtcccggccgtgcaaccggccaccggcgca
gagcagatggacgaagacgaggaggccttgctcgacggcatggaaagcgccgccgaaggc
gccgacgctagtgttgtcgacgaggccgaaccagtcgccggcgagcaaaccgcgggcgcg
ccttccgctgcggaatga
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