Herbaspirillum hiltneri: F506_21710
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Entry
F506_21710 CDS
T04039
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F506_21710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hht03021
]
F506_21710 (rpoB)
03400 DNA repair and recombination proteins [BR:
hht03400
]
F506_21710 (rpoB)
Enzymes [BR:
hht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F506_21710 (rpoB)
Transcription machinery [BR:
hht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F506_21710 (rpoB)
DNA repair and recombination proteins [BR:
hht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F506_21710 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DNAPolymera_Pol
TOBE
Motif
Other DBs
NCBI-ProteinID:
AKZ64924
UniProt:
A0ABN4I1B2
LinkDB
All DBs
Position
complement(4798677..4802783)
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQTFLQTDKTTSQRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGAPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVIK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFTLRAE
GAEMEFVSERLRGEVARFDILDKAGKPLVAKDKRINAKHVRDIEAAGIKQISVPEDYLLG
RVLAKNIVDGDTGEVIASANDELTEELLARLREANIDAVQTLYTNDLDQGGYISQTLRTD
DTADQTAARVAIYRMMRPGEPPTEDSVEALFNGLFYSEDRYDLSAVGRMKFNRRIGRDEL
TGAMTLSNEDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
EGSKVTNQIDYLSAIEEGRYIIAQANATIDASLKLSDELVSAREAGETILVSPERVQYMD
VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQALRGGIVDYVDAGRVVIRVNDEEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVG
DRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGITYIGAEVEAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLEKMLIGKVANGGPKKLVKGTKLDKAYLDDLDKYHWFDIR
PADDDMATALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGLRIGEMLTAQVKIAELRKFLTTIYNESGKKEALDEFSDQEILELAANLKKGVPFAT
PVFDGAHEDETRRMLDLAYPDHIAKQLGMTPSKNQVTMYDGRTGEAFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaagcgtattcgtaaatcctttgcgaaacgcgctaac
gtccacaacgttccgttcctgctagcgactcagatcgagtcataccagacattcttgcag
acggacaaaacaacgtcccaacgcaagaacgaaggtctgcaatcggcctttacatcgatt
ttccctatcgtttcgcacaatggttttgcgcgtctcgagtttctgtcctatgtgttgggc
gcgccgccgttcgacgtcaaggaatgccaacaacgtggcctgaccttcgcgtcgccgctg
cgtgccaaagtgcgtctggtgatcctggacaaggaatcgccgaccaagccggtcatcaag
gaaatgaaggaacaggaagtctacatgggcgaattgccgctcatgacgaccaccggttcg
ttcgtcatcaacggcaccgaacgcgtcatcgtgtcgcagctgcaccgttcgccgggcgtg
ttcttcgaacatgaccgcggcaagacgcattcgtccggcaagctgttgttctccgcacgc
atcattccttaccgcggttcgtggctcgacttcgaattcgatccgaaggacatcctgttc
ttccgcgtcgaccgtcgtcgcaagatgccggtaacgatcctgctcaaggccatcggcatg
acgtccgagcagatcctggcgaacttcttcgtgttcgacaatttcaccctgcgcgctgaa
ggcgccgagatggaattcgtgtccgagcgcctgcgcggcgaagtagcgcgtttcgacatc
ctcgacaaggccggcaagccgctggtcgcgaaggacaagcgcatcaacgccaagcacgtg
cgcgacatcgaagctgcaggcatcaagcagatctccgtgccggaagactacctgctgggt
cgcgtcctggcgaagaacatcgtcgacggcgacaccggcgaagtcatcgcttcggccaac
gacgaactgactgaagaattgctggcccgcctgcgcgaagccaacatcgatgcagtccag
acgctgtacaccaacgacctggatcagggcggctacatctcgcaaaccctgcgtaccgac
gacacagcggatcagaccgctgcgcgcgtggcgatctatcgcatgatgcgtcctggcgaa
ccgccgaccgaagactcggtggaagccctgttcaacggcctgttctacagcgaagaccgt
tacgacctgtcggccgtcggccgcatgaagttcaaccgccgtatcggccgtgatgaactg
accggcgcgatgaccttgtcgaacgaagacatcctggccgtgatcaagattctggttgaa
ctgcgcaatggccgcggcgaagtcgatgacatcgatcacttgggtaaccgtcgcgtccgt
tgcgtcggcgaactggcggagaatcaattccgcgccggtctggtccgcgttgagcgcgcc
gtcaaggaacgtctcggccaggccgaagcggacaacctgatgccgcatgacctgatcaac
tcgaagccgatctcggcagcgatccgcgaattcttcggttcgtcgcagttgtcgcagttt
atggatcaaaccaacccgctgtcggaaatcacgcacaaacgccgtgtttccgccctggga
cctggcggtctgacccgcgaacgtgccggctttgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgcccgatcgaaacgcctgaaggcccgaacatcggcctgatcaactcg
ctggcgctgtatgcccgcctgaacgaatacggcttcctggaaaccccataccgcaaggtt
gagggcagcaaggtcaccaaccagatcgactatctgtcggcaatcgaagaaggccgctac
atcatcgcccaggcgaatgcgaccatcgacgcttcgctgaagctgtccgatgaactggtt
tcggcgcgtgaagccggcgaaaccattctggtctcgccggaacgcgtgcagtacatggac
gtggccccaggccaggtcgtgtcggtggcggcgtcgctgattccgttcctcgaacacgat
gatgcgaaccgcgcattgatgggcgccaacatgcaacgtcaggcggttccttgcttgcgt
ccggaaaagccgctggtcggcaccggcatcgagcgcaccgttgcagtcgactccggcacc
accgtgcaagcgttgcgtggcggtatcgtcgattacgtcgatgcaggccgtgtggtgatt
cgtgtgaacgatgaagaagcgcaggctggcgaagtcggcgtcgacatctacaacctgatc
aagtacacacgttcgaaccagaacaccaacatcaaccagcgtccgatcgtcaaggttggc
gaccgtgtcgccaagcatgacgtgatcgccgacggcgcatcgaccgacctgggcgaactg
gctctgggtcagaacatgctggtggcgtttatgccatggaacggctacaacttcgaagat
tcgattctgatctccgaaaaagttgtggctgatgaccgctacacctcgattcacatcgaa
gagctgtcggttgtcgctcgcgacaccaagctcggcgcggaagaaatcacccgcgatatt
tcgaacctggcggaaaaccagctggcgcgtctggacgaatccggcatcacctacatcggt
gctgaagtcgaagccggcgatacgctggtcggtaaagtgacgccaaagggcgaaacccag
ctgacaccggaagagaagctgctgcgcgcgatcttcggcgaaaaggcatccgatgtgaag
gacacctcgctgcgcgtgccttcgggcatggtcggcaccgtcatcgacgtgcaagtgttc
acccgcgaaggcatccagcgcgacaagcgcgcacaacagatcatcgacgatgaactgaag
cgctatcgcctggacctgaacgaccagctgcgtatcgttgaaggcgatgccttccagcgt
ctggaaaagatgctgatcggcaaggtcgccaacggcggtccgaagaaactggtcaagggc
accaagctggacaaggcgtacctggacgatctggacaagtaccactggttcgacatccgc
ccggcggatgacgacatggcgacagcattggaagcgatcaaggaatcgatcgccgaaaag
cgtcaccagttcgatctggcgtttgaagaaaagcgcaagaagctgacacaaggtgacgaa
ctgccgccaggcgtgcagaagatggtcaaggtttacttggccgtgaagcgccgcctgcaa
ccaggcgacaagatggcgggtcgtcacggcaacaagggtgtggtttcgcgcatcctgccg
atcgaagacatgccgcacatggccgacggtacaccagccgacatcgtgctgaacccgctg
ggcgtgccatcgcgcatgaacgtcggtcaggttctcgaagtccatctgggctgggcagcc
aagggtctgggcctgcgcatcggcgaaatgctgactgcacaagtgaagatcgctgaactg
cgcaagttcctgaccacgatctacaacgaatcgggcaagaaggaagcgctcgacgagttc
agcgatcaggagattctggaactggcagccaacctgaagaagggcgttccgttcgccacg
ccggtgtttgacggcgcgcacgaagacgaaacccgtcgcatgctggatctggcatacccg
gatcacatcgccaagcaactgggcatgacgccgtcgaagaatcaggtcaccatgtatgac
ggccgtaccggcgaagctttcgagcgcaccgtgacggttggctacatgcattacctgaag
ctgcatcatctggttgacgacaagatgcacgcacgttcgaccggtccttactcgctggtg
actcagcagcctctgggcggtaaggcgcagttcggcggccaacgcttcggtgaaatggaa
gtctgggcactggaagcctacggcgcatcgtatgtgctgcaggaaatgctgaccgtgaag
tccgatgacgtgaacggccgtaccaaggtttatgaaaacctggtcaagggcgaccacgtg
atcgacgccggcatgccggagtccttcaacgtgctggtcaaggaaatccgttcgctcggt
atcgacatcgatctcgaacgcgactga
DBGET
integrated database retrieval system
