Heterobasidion irregulare: HETIRDRAFT_154447
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Entry
HETIRDRAFT_154447 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_154447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_154447
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HETIRDRAFT_154447
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
HETIRDRAFT_154447
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
A_amylase_dom_C
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
20667495
NCBI-ProteinID:
XP_009542487
JGI:
Hetan2_154447
UniProt:
W4KIH3
LinkDB
All DBs
Position
Unknown
AA seq
2055 aa
AA seq
DB search
MTATLNQLRNYLVQTSWLNSTTQVLTTEPDGISIMRGNVITILTNIGSPPANISIKAYTP
WDNSFASTDIFTCTQWAVGSNGTVEVEYTKGGVPVILVPDAILKGAAMYFENAVLSLCQH
PSFDHADLSPSQVAKLLSNLLVAPSLESPTLDATQRQALIAAAQAKYGSETVAPMLHQIF
PRLSLPPGTTLVQAFNQFGPEITNDVDTVRALLLRFGVSDSNPPRDAQVIEYMSTLARQA
AEGSTLGDVNAFVRALSSYSVPLNWANAIKAFDIPDRNGVDTATLKLLIAILLNSPREAE
VHAVTGFWSMWSNSLYQLRLLDALLSLPADTFNFVTLPGRRIVTMDDVTNASPTIKALAA
NVQGHTWNSLDLFEVLVRLADSDSADIRNFVREMLDKAVRISAELVHMGLLEAPQLSWNE
IRLEYSQKLLNMFLAGHPNHQLVFMRIWQIQPTYLTNAFRDFYEDSPLNITRILDVAQDL
KILDALLDVRPFAFALDVAALASRREYLNLDKWLADNVTAHGADFLHDVIAFLDTKMESE
KATRISEAAVDSRTMTLNPLTITIFLRVLRNSASIMHPNDVDYCLEVRNACLQIHPRLMN
LIPGSDAEPGFSVVTYASDIEVEVDGIFKQMYDEHITIDEVIAMLQRNKNSSNSRDHEIF
SCMLHFLFDEYKFFQTWYPPRELAMTGYLFGSIIQYELVDYIPLGIAIRYVIDALNCSPE
TNLFKFGIQALSRFESRLSEWQPLCQALLSIPHLLEARPDLAASIQRALANANDSSINPA
DMRALSTAPAEPLPVFNSIKPDKYDDALEPPPEEVSDKILFIVNNLAPTNFDSKLEDMKG
SFKDDYARWFANYLVDQRVSTEPNNHQLYLRFLDALDKGTLLKFVLQETIAKSAHLLNAE
KTMQSSSERAILKNMGSWLGTITLARDKPIKHKNLGFKELLVEGYDNGRLIVAIPFVCKT
LEPAAKSKVFRPPNPWLMAVVSLLAELYHYAELKLNMKFEIEVLCKSLDIDLDTVEATAV
LRSRPFGDPMSGPGLPDYVGDIDSLPMGGYDPSVHMQGGSSLLALGSANATDAQRVIGSQ
IEVILSDLIQHVTVNAQLAPFSTNHTFKRAVQLAVDRSVREIILPVVERSVTIAGISTRE
LVAKDFATEGNEETLRQAAHSMAQKLAGSLALVTCKEPLRSNLSSHMRQFLIEHGFSEQM
IPDPVVVMLVQENLDLACQAIEKAAMERAIADVDESFAPAYEARRRHRQTNRGQMFWDSA
ALNSNFSQTLPDPLRIKPSGVQPNQIGVYEDFAGLDTKRRWASRPSSTMSYSRHDPLSSA
MYPSSPVMDQPLTVPTVPSHQEAMDRFGALVKELEAVLIQLPIQSLAALASNHEVRHLVR
QILYLAAESPDRHRTPLLISQKIVQLLYKTPSQLARDIYVALLDQLCHSFEDVAKEAITW
LIYADDERKLNIPVTVTLLRSGLITIAQQDQQLAKLLSGDQRPSLQNFAAGLIRECLTCD
PPLASQSQFSFTIEVLTQIAQSGKGHDETHRLLEDLRGVRRPSQSETQQLREKLFIWFQQ
WVTVFQRSHSPEKSFVAYITQLTKQGILKAEDVSSFFFRVCAESSVNSYLKCMASGDYAY
AFHALDAMSRLIVYIIKYHGDASGVNNDQAKVHYLTKILSIFVLVLANMHEEQGPAFQQK
PFLRFFSSLINDLHAIEGHLGSVYFQLLLAISDTFSSLQPTYFPGFAFSWMSLISHRLFM
PKLLLSENREGWSAFYKLLLSLFKFLSPFLKSAELQQSSRDLYRGSLRLLLVLLHDFPEF
LSEYYFSLCDMIPPRCIQLRNIVLSAFPPTLTLPDPHLRNVKFDSIPEMGPIPPILSDFT
SGLKTGDLRTHLDQYLLNRGSPSFLPSLKDRLKQSPSDGISETYNLSLINSLVMYIGVSS
VAQAKARSGSSLFNAGDPGVVALRYLATSMDTEGQHHLLSSIVLHLRYPNAHTHWFSSLV
LYLFVEVKDDMFSEVVTKVLLERFIVHRPHPWGALVTFIELLRNPKYDFWSKDFIRAAPE
VTLLLESVARSIFQS
NT seq
6168 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccactcttaaccagcttcgcaactatcttgttcagacaagctggttgaactct
acaacacaagtattgacgaccgagcctgacggtatttctatcatgagaggaaacgtcatc
acaattttgacgaacattggttcgccgccggcgaatatcagcatcaaggcatacacgcct
tgggacaatagtttcgcttccacagacattttcacgtgcacccaatgggccgttggtagc
aatggaacggtggaagttgagtatactaagggcggtgttcccgtcatcctggtaccagat
gcgatcttgaagggcgctgcgatgtactttgagaacgccgtgctgtccctgtgtcagcac
ccttctttcgatcacgcggacttgtcgccatcgcaggtcgcgaagttgttgtcaaacctt
cttgtcgcgccgtcgctcgagtcgccgacgctggacgcgacccagagacaggcgctgatc
gcagcggcacaggcgaagtatgggtcggagacggttgcgcccatgttgcaccagattttt
ccgcgtttgagtctaccgccgggcacgaccctcgttcaggcgttcaatcaatttgggcct
gagattacaaatgacgtagacactgtacgcgcactattgcttcggttcggtgtgtccgac
tccaaccctccacgggacgcccaagtcatcgagtacatgtcgacattggctcggcaagcg
gcggagggctcgactctaggtgacgttaatgcgtttgttagagccctaagtagttattct
gtccctttgaactgggccaatgccatcaaagcattcgacatcccggatcgcaatggtgtt
gatacagcgactctcaagctgctgattgccatcttgttgaacagtcctcgcgaggctgaa
gtacatgccgtgactggtttctggtcaatgtggtctaattccttgtatcaattacgcctt
ctggacgctctcctttctctcccagccgacacttttaattttgttacgctgcctggtcgg
cgaattgttacgatggatgatgttactaacgccagcccaacgattaaggccctcgctgcg
aacgtccagggtcatacctggaactccttggatcttttcgaagtgttggtccgcctggcg
gattcggactccgctgatataaggaatttcgtgcgggagatgttggacaaagcagtccgc
ataagcgcggagttagttcacatgggattgcttgaggctcctcaattgtcctggaacgaa
atccggctggaatattctcagaagctcctcaatatgttcttggctggacaccctaatcac
caattagttttcatgcgaatttggcagattcaaccaacttacctcaccaacgctttccgc
gatttctatgaggacagtcctcttaacatcaccagaatcttggatgttgcacaagattta
aagattttggatgctctgttagatgtccggcctttcgcttttgcgcttgatgttgcggct
ttggcttctcgaagagaatatctgaatctcgacaagtggttggcagacaatgttacggct
catggtgcggacttcctccacgacgtgatcgcgttcttggacacaaaaatggagagcgag
aaagcaaccaggatctcggaggcggcagttgactctcggaccatgacgctgaatccattg
acgattaccatatttcttcgcgtcctccgtaacagtgctagtatcatgcaccctaacgac
gtcgactattgccttgaagtccgcaacgcctgcctccagatacaccctcgcctgatgaac
ttgattcctggctctgatgccgagccaggcttctccgtggtcacatatgcatcggacatt
gaggttgaggtggatggtatcttcaagcagatgtatgacgaacacataaccatcgacgag
gtgatcgccatgctgcagcgcaacaagaattcatccaattcccgcgaccacgaaatcttt
tcttgcatgctccactttctctttgatgagtataaattcttccaaacatggtaccctcct
cgggaattggccatgactggctacctatttgggtccatcatccagtacgaactcgttgac
tacatccctcttggtatcgccatccgatatgtcatcgatgccttgaattgctctccggag
accaatcttttcaaattcggtatccaggcgctgtcgcgattcgaatcccgtctctcagag
tggcagcctctatgccaggctctgctcagcataccccacctgctggaagctcgccccgat
ctcgctgccagcatccagcgagccctcgccaacgccaacgacagctctattaacccggcg
gatatgagagccctttccactgctcccgcggaacccctacctgtatttaattccatcaaa
cccgataagtacgacgacgccctggagccgcctccggaagaggtttcggacaaaattctc
ttcattgtgaacaatctggccccaacaaactttgacagcaagttggaggacatgaagggc
tccttcaaagatgactatgctcgatggtttgccaactatcttgtcgatcagcgtgtcagc
acggagcccaacaatcatcagctataccttcggttcttggacgctctcgacaaagggact
cttctgaagtttgtcctccaggagacgattgcaaaatcggcgcacttgttaaacgcggaa
aaaacgatgcagtcgagctccgaacgtgcgattctcaagaacatgggctcttggttagga
accatcacgctagcccgggacaaaccgatcaagcacaagaacttaggtttcaaggagctg
ctcgtcgagggttatgacaacggtcgactcattgtcgccattcctttcgtttgcaaaacg
ttggagcccgcggcgaagtcgaaagtgtttagacctccgaacccttggcttatggcggtc
gtcagcttgcttgcggaattgtaccactatgcggaactaaagctgaacatgaagtttgaa
atcgaagtgctctgcaaaagcttggacatcgatctcgataccgtcgaagccaccgcggtc
ctgcgtagtaggcctttcggcgatccgatgtcagggcctggtttacccgattatgttggc
gacatagactccttgcccatgggcggctacgatccatccgtccatatgcaaggcggctct
tcgttgttggccctgggatctgctaatgctaccgacgctcagcgtgtaattggatctcaa
atcgaagtcatcttgtcggatctcattcagcatgtcaccgtcaacgctcaactcgcacct
ttctccaccaaccacaccttcaaacgcgctgttcaactggctgtcgatcggtctgtgcga
gagatcatccttcccgtcgtagaacgttctgtgacgattgcgggcatctcgacccgcgaa
cttgtagcgaaggactttgcaacggaaggaaacgaggaaacactgcgtcaagcagcgcac
agcatggcacaaaagctagctggaagccttgccctcgtcacctgcaaggagccgctgcga
agcaacctgtcgagccatatgcgccagtttttgattgaacacggtttcagtgagcaaatg
atccctgacccggtggttgtgatgctcgttcaagagaatctcgacctggcctgccaagcc
atcgagaaggcagccatggaacgtgctatcgccgatgtggacgaaagctttgctcctgcg
tatgaagctcggcgacgtcatcgtcagacaaatcggggtcagatgttttgggacagcgct
gcgcttaattccaacttctctcaaactctaccggatcctctcaggattaaaccaagcgga
gttcagccaaatcagatcggcgtgtatgaagacttcgctggcttggacacaaaacgtcgc
tgggcgagtcggccgtcgtcgactatgtcatactctcgtcatgatccactgtcttcagcg
atgtacccttcgtccccggtcatggatcagcccctcacagtaccaacagtgccgtctcat
caggaagctatggaccggttcggtgctttggtcaaggagctagaggctgttttgattcaa
ctcccaatccagtctcttgctgcgttggcgtccaatcacgaagttcgtcacttggttagg
caaatcctttacctcgctgcagagtctcccgatcgccaccgcacaccgctgttaatctcg
cagaagattgttcaacttctgtacaagactccttctcagttggcccgggatatctatgtg
gccctattggatcagctgtgtcactcgtttgaagatgtggcgaaggaggcgatcacctgg
ttaatatatgccgatgacgagcgcaagctcaacatcccggtcaccgtaactttgcttcgc
agtggcttgatcactatagctcaacaggatcagcagttggctaagctactatccggggac
cagcgtccaagcctccaaaacttcgctgccggtctcatccgcgaatgccttacttgcgac
cctccccttgcctcccagagtcaattttcgttcacgattgaggtcctcacgcagattgct
cagtccgggaagggacacgacgagacccaccgattgttggaagatctcaggggtgttcgc
cgaccctcgcagtcagagacgcaacaacttcgtgaaaagctcttcatctggttccagcaa
tgggtcaccgttttccagcgctctcattcgccggaaaagtcattcgtcgcctatatcact
cagttgacaaagcagggcattttgaaggccgaggacgtctcgtcgttcttcttccgagtg
tgtgcagaatctagcgtcaacagctatctcaagtgcatggcgtcaggtgactacgcctac
gcattccatgctttggatgcgatgtcaaggctcattgtctacatcatcaagtaccacggg
gatgcatccggcgtcaacaacgaccaggcgaaggttcattatctgaccaagattctctcg
atctttgtcttggtgcttgctaacatgcatgaggaacaaggacccgcgttccaacagaaa
cccttcctccgcttcttctctagcttgatcaatgatctgcatgccatcgagggtcatctc
ggatcagtctacttccagctactccttgccatcagtgacactttcagctcgttgcagccg
acgtacttccctgggtttgcattctcgtggatgagtctcatttctcatcggctgtttatg
ccaaaacttctcttatccgaaaatcgcgagggatggtcggccttctacaaactcttactc
tcgttattcaagttcctctctcccttcctcaagtctgccgaattgcagcaatcgtcccgc
gacctttatcgcgggtcgctgagattgcttcttgtacttctccacgactttcccgagttc
ctcagcgagtattacttcagcctctgcgatatgatcccgcctcgctgcatccaactccgc
aacatcgtccttagcgccttcccccccaccttgaccctccccgacccgcaccttcgtaat
gtcaaatttgattcgattcccgaaatgggacctatacctcctatcctttctgatttcacc
tctgggctgaagactggtgatcttcgcactcacctcgatcaatacctcctcaatcgtggt
tcaccgtccttccttccttctctcaaagatcgtttgaagcagtcaccttcggacggaatc
tcggagacttacaacttgtctttgatcaactctttggtcatgtacatcggagtgtcttcg
gtagctcaagccaaggccaggagtggctcctctctgttcaacgctggcgaccctggtgtg
gttgccttgagatatttggcgacgagcatggacactgagggtcaacaccatctattgagc
tccattgtcttacaccttcgttaccccaacgcgcacacccactggtttagctcactcgtt
ctctacctcttcgtcgaagtgaaggacgatatgttcagtgaagttgtaaccaaggttttg
ttggagaggttcattgttcatcgccctcacccgtggggtgccttggtcaccttcatcgaa
cttctccgcaaccccaagtacgacttttggagcaaagattttatccgggctgcgcctgag
gttaccctacttctcgagagtgtggcgaggtccatattccagtcatga
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integrated database retrieval system
