Halomonas kashgarensis: R5M92_14460
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Entry
R5M92_14460 CDS
T11163
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hka Halomonas kashgarensis
Pathway
hka03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hka00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R5M92_14460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hka03021
]
R5M92_14460 (rpoB)
03400 DNA repair and recombination proteins [BR:
hka03400
]
R5M92_14460 (rpoB)
Enzymes [BR:
hka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R5M92_14460 (rpoB)
Transcription machinery [BR:
hka03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R5M92_14460 (rpoB)
DNA repair and recombination proteins [BR:
hka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R5M92_14460 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
XAW59436
LinkDB
All DBs
Position
complement(3148676..3152752)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMSAEEILDEFFETSKFHIEKSG
FSVELVPSRLRGETATFDIKDADGSVIVEEGRRVTQKHIRQLEKSGIERLDVPMEYLFGK
TLAKDQVDTRTGELICPCNTEITPELLEALGQGGIVELETLYTNDLDCGSFISDTLKLDT
TNSQLEALVEIYRMMRPGEPPTKEAAETLFHNLFFTEDRYDLSGVGRMKFNRRLRRDADT
GAGVLDQRDILDVLKELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DRQLTDDIVHLSAIEEGDYVIAQASAAVDESNKLNDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYVRSNQNTCMNQRPIVRPGD
NVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGSEEITSDIPNVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMVGTVIDVQVFTRDGVEKDTRALSIEQMQLDE
VRKDLQETYRIAEDATFERLKRTLEGQAVNGGPNLKKGDVLDEAYLDELPRQQWFKLRLQ
DETFNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGMKIDSMLRDARGQQVAEIRDFLGQIYNTPGTRVEDLDSLTDDEVIALAKNLKAGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMTLYDGRTGDAFDRSVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccctacttgctggccatccagcttgattcctactacgacttcctccag
caggatcgttcgcccgacgagcggcacgaggtcggcctgcacgcggcgttcaagtccgtg
ttcccgatcgagagcttctcgggtaacgcggctctcgagtatgtcagctaccgtttcggc
accccggcgttcgatgtcaaggagtgccagctgcgcggcgtgacctactccgccccgctg
cgcgtcaaggttcgcttgatcatctatgatcgcgactcctcgaacaaggcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
gtgatcaacggtaccgagcgtgtcatcgtctcccagctgcaccgctcgccgggcgtgttc
ttcgaccacgacaagggcaagagccactcctcgggcaagctgctctactcggcacgcgtg
attccttaccgcggctcctggctcgacttcgagttcgatcccaaggacaacgtcttcgtg
cgtatcgaccgtcgccgcaagctgccggcgtccgtattgatgcgtgcattgggcatgagc
gccgaagagatcctcgacgagttcttcgagaccagcaagttccatatcgagaagtccggc
ttctccgtggagctggtgccctcgcgcctgcgcggcgagaccgcgaccttcgacatcaag
gatgccgatggcagcgtgatcgtcgaggaaggccgtcgtgtcacccagaagcatattcgc
cagctggagaaaagcggcatcgagcgcctcgatgtgccgatggagtacctgttcggcaag
acgttggccaaggatcaggtcgacaccaggaccggcgagttgatctgcccgtgcaatacc
gagattacgccggagctgctggaagcgttgggccagggcggtatcgtcgagttggaaacg
ctgtataccaacgacctggattgcggctcgttcatctccgatacactcaagctggacacc
accaactctcagcttgaagcgctggtggaaatctatcgcatgatgcgccccggtgagccg
cccaccaaggaagccgccgagacgctgttccacaacctgttcttcaccgaagaccgttac
gacctgtccggcgtaggtcgcatgaagttcaaccgtcgcctgcgccgcgacgccgatacc
ggtgccggtgtcctcgatcagcgcgatatcctcgatgtactcaaggagctgatcaatatc
cgcaacggcttcggcgatgtcgacgatatcgaccacctgggcaaccgccgtatccgttgt
gtcggcgagatggcggaaaaccagttccgcgttggtctggtgcgcgtcgaacgtgcggtg
aaagagcgtctttccatggccgaaagcgaaggcctgatgccgcaggatctgatcaacgcc
aagccggtggcggcggcggtgaaggagttcttcggctccagccagctttctcagttcatg
gaccagaacaacccgctctccgaggtgacgcacaagcgtcgtgtctcggcgctcggcccg
ggtggcttgacccgtgagcgcgccggcttcgaggtgcgcgacgttcacgccacgcactac
ggccgcctgtgcccgatcgagacaccggaaggcccgaacatcggcctgatcaactcgttg
gccacctacagccacaccaacagctacggtttcctcgagacgccgtaccgcaaggtggtc
gatcgtcagttgaccgacgatatcgttcacctgtcggcgatcgaggagggcgactacgtt
atcgcccaggcgtcggcggcggtggacgagtcgaacaagctgaatgacgatctggtacag
gtgcgtcatcgcggcgaaaccactttcatgcgccccgagcaagtgacgctgatggacgta
tcgccgcgccaggtcgtctccgtggcagcggccttgattccgttcctcgagcacgatgac
gccaaccgcgccttgatgggctcgaacatgcagcgtcaggcggtgccgaccctgcgtgcc
gaaaagccgctcgtcggtaccggcatggagcgcttcgttgcacgcgactccggcgtctgt
gccgtggcgcgtcgtggcggtgtgatcgactcggtggatgcgcgtcgcgtcgtggtacgg
gtcaacgaagacgagatcatcggtggtgaagccggggtcgatatctacaacctgaccaag
tacgtgcgttccaaccagaacacctgcatgaaccagcgccccatcgtgcgtcccggagac
aacgtggcacgtggcgatatcctcgccgacggcccgtcggtggacatgggtgacctggcc
ctgggccagaacatgcgcatcgcgttcatgccctggaacggctacaacttcgaggactcc
atcctgctgtccgagcgggtggtccaggaagaccgtttcaccacgatccacattcaggaa
ctgacctgcgtgtcccgtgataccaagttgggttcggaagagatcacctccgatatcccc
aacgtgggtgagtcggcgctctccaagctggatgaggcgggcgtagtctacatcggcgcc
gaagtgggtcccggcgatattctggtaggcaaggtgacgcccaagggcgaaacccagctg
acgccggaagagaagctgctgcgtgccatcttcggcgagaaggcgtctgatgtgaaagac
acctcgctgcgtgcgccgaccggcatggtcggtaccgtgatcgacgttcaggtcttcacc
cgcgatggtgtcgagaaggacacccgtgcgctatccatcgagcagatgcagctcgacgag
gtgcgcaaggatctgcaggagacctaccgcatcgccgaagacgccaccttcgagcgtctc
aagcgtaccctggaaggccaggcggtgaacggcggtccgaacctgaagaaaggcgacgtg
ctggacgaggcgtacctcgacgaactgccgcgtcagcagtggttcaagctgcgcctgcag
gacgagacgttcaacgaactgctggcccaggccgacgagcagctcgagaatcgtcgcaag
gagatggacgagcgtttcgaagacaagaagcgcaagctgacccagggcgacgatctggca
ccgggcgtgctcaagatcgtcaaggtctacatggcggtcaagcgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtcatctcggccatcatgccgatcgag
gacatgccgttcgacgagaagggcgagccggtcgacgtggtgttgaaccctttgggtgta
ccgtcgcgcatgaacgtggggcagattctggaaacccacctgggcatggcggcacgcggt
ctgggcatgaagatcgacagcatgttgcgtgatgctcgcggccagcaggtcgccgagatc
cgtgacttcctgggccagatctacaacaccccgggcacgcgtgtcgaggatctggattcg
ttgaccgacgatgaagtgatcgcgttggccaagaatctgaaggcgggtgtgccgatggct
acgccggtattcgacggtgccaaggagcatgagatcaagcatctgctcaagcttgccgac
attcccgaatccggccagatgaccctgtacgacgggcgtaccggcgatgccttcgaccgc
tcggtgacagtgggctacatgtatatgctcaagctgaaccacctggtagacgacaagatg
cacgcccgttccaccggttcttactcgctggtgacccagcagccgctgggtggtaaggcc
cagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagcgtatggcgcc
gcatacaccctacaagagatgctcaccgtcaagtcggatgacgtcgaaggccgcaccaag
atgtacaagaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactggtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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integrated database retrieval system
