Halobiforma lacisalsi: CHINAEXTREME04525
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Entry
CHINAEXTREME04525 CDS
T04669
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hlc
Halobiforma lacisalsi
Pathway
hlc03022
Basal transcription factors
hlc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hlc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CHINAEXTREME04525
09124 Replication and repair
03420 Nucleotide excision repair
CHINAEXTREME04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlc03021
]
CHINAEXTREME04525
03400 DNA repair and recombination proteins [BR:
hlc03400
]
CHINAEXTREME04525
Enzymes [BR:
hlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CHINAEXTREME04525
Transcription machinery [BR:
hlc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CHINAEXTREME04525
DNA repair and recombination proteins [BR:
hlc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CHINAEXTREME04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PhoH
SLFN-g3_helicase
nSTAND3
AAA_16
DUF6471
Motif
Other DBs
NCBI-ProteinID:
APW97078
UniProt:
A0A1P8LMS9
LinkDB
All DBs
Position
complement(962035..964464)
Genome browser
AA seq
809 aa
AA seq
DB search
MTDWRSIFGHAEPYDEQVDGIETAIETAREGGYTVVEGACGTGKTMLALTAGIDLVRDPD
SDYERVLVLTSVKQQLRQFEADLETINENLPDDWRPVSGLTLVGKADVCPYNREGAAEID
DGNVYDRCETLRDRTRDLTGEGGETTAQNLAARARSQQIGLADSGRTNSGTYLETAGEPT
PYPRDLPEYDDGGAAGVATEYCPFYAQYLEDLPESEDGTGDPAEAVPYDFTQAGMVTPED
LVARAARNGTCPHSVMGAALGQVEVVVGNYYHAFDPRTVGSFTGALLDDSTFVVCDEAHM
LEPRVRDLVSDGVGDRTLRDAETELSRVIQPVKFEREGRRAEGGSQTADADLVRAELNDS
DVTYEELNRTLEFIGDLRAELDRRVTAYLDRNHRGWKSNLNDLEDDELPLRDPAEPAEDE
ITEWAREAGYGDAEWVRAEAVGAVVARILNEAEDEERTRAAPAVGRVLGEWYRRDHTDYF
REIELERTWDDTEPADSWRRAYNARLALHNCVPSDAIGERLAAFGGGVLMSATLEPIDAF
TEVTGLEYLAREEDRPIVERRYGLHFPEENRESFAVAAPKFTYDNRGYPGEENPTRTHYA
DAVSKVARLPGNVLVGMPSYAEAEWIAGELEERVDKPVLLDASSDDETTQSLKAEFFAGD
GKVLVTSLRGTLTEGVDYSGDRLSAAVVCGVPIVNTSSPRTKAVRRAYDDAFGDVPGQRS
GSKPGASASGVGFEYALTIPAVRKARQAIGRVIRSPEDVGVRVLLDERYARDSWDSVREY
LPDDGEFQSVSSDMLEYGLERFRSRLESA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgacggactggcgctcgatcttcggccacgccgaaccctacgacgagcaggtcgacggg
atcgaaaccgcgatcgagaccgcccgcgagggcggctacaccgtcgtcgagggggcctgt
ggcaccgggaagaccatgctcgcgctgacggccgggatcgacctcgtgcgcgaccccgac
agcgactacgagcgcgtcctcgtgctcacgagcgtcaaacagcaactgcgccagttcgag
gcggacctcgagacgatcaacgagaacctgcccgacgactggcggcccgtctcggggctc
acgctggtcggcaaggccgacgtctgtccgtacaaccgcgagggagcggcggagatcgac
gacggcaacgtctacgaccgctgcgagacgctgcgggaccgcacccgtgacctcacgggc
gagggcggcgagacgaccgcgcaaaacctcgccgcgcgggcccgtagccagcagatcggg
ctggccgacagcggccgtacgaacagtgggacctacctcgagactgcgggcgaaccgacg
ccctacccgcgggacctcccggagtacgacgacggcggcgcggccggcgtcgccacggag
tactgcccgttctacgcccaatacctcgaggacctgccggaaagcgaggacggaaccggc
gaccccgcggaggccgtcccctacgacttcacccaggccgggatggtcacccccgaggac
ctggtggcccgcgcagctcggaacggcacctgcccgcattcggtgatgggcgcggcgctt
ggccaggtcgaggtcgtcgtcggcaactactaccacgcgttcgaccccagaaccgtcggc
tcatttacgggcgcgttgctcgacgactcgacgttcgtcgtctgtgacgaggcgcacatg
ctcgagccccgggtccgggatctagtcagcgacggggtcggggaccgtacgctgcgggac
gccgagaccgaactctcgcgggtcattcagccggtgaagttcgagcgtgaggggcgacgc
gcggaggggggctcccagacggctgatgcagacctcgtgcgcgccgaactgaacgacagc
gacgtcacctacgaggaactcaaccgcaccctcgagttcatcggcgacctccgggcggaa
ctcgaccgccgggtgacggcctatctcgaccggaaccacagggggtggaaatcgaacctg
aacgatctcgaggacgacgagctccccctgcgcgacccggcggaacccgccgaggacgag
atcacggagtgggcccgcgaggccggctacggcgacgccgagtgggtccgcgccgaagcc
gtcggggccgtcgtcgcccggatcctgaacgaggccgaggacgaggagcgcacccgcgcc
gcgcccgcggtcggccgcgtgctcggcgagtggtaccgccgcgatcacaccgattacttc
cgggagatcgaactcgagcggacctgggacgacaccgaacccgcggattcctggcggcga
gcctacaacgctcgcctcgcgctgcacaactgcgtcccgagcgacgccatcggcgaacgg
ctcgcggccttcggcggcggcgtcctgatgagtgccaccctcgagccgatcgacgccttc
accgaggtgacgggactggagtacctcgcacgcgaagaagacaggccgatcgtcgagcgc
cgctacgggctacacttccccgaggagaaccgcgagagcttcgcggtcgccgcgccgaag
ttcacctacgacaaccgtggctatccgggcgaggagaacccgaccaggacccactacgcc
gacgcggtctcgaaggtcgcccggctcccgggcaacgtcctcgtcgggatgcccagctac
gccgaggccgagtggatcgccggcgaactcgaggaacgagtcgacaaacccgtcctgctc
gacgcctcgagcgacgacgagacgacccagtcgctgaaagccgagttcttcgcgggcgac
gggaaggtgctcgtgacgagcctgcgcgggacgctgaccgagggggtcgactacagcggc
gaccggctctcggccgccgtggtctgtggcgtcccgatcgtcaacacctcgagcccgcgg
acgaaggccgttcggcgggcctacgacgacgcgttcggggacgtccccgggcaacggtcg
gggagcaagccaggcgcatcagcgtctggcgtggggttcgagtacgcgctgacgatccct
gcggtccggaaggcacggcaggcgatcggtcgcgtcatccgctcgcccgaggacgtcggg
gtgcgggtcctgctcgacgagcgctacgcccgcgatagctgggactccgtgcgcgaatac
ctgcccgacgacggcgagttccagtcggtcagttcggacatgctcgagtacggcctcgag
cggttccgctcgcggctcgagtcggcctag
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