Humulus lupulus (common hop): 133777613
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Entry
133777613 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133777613 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133777613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133777613
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133777613
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133777613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
133777613
NCBI-ProteinID:
XP_062073286
LinkDB
All DBs
Position
5:119980761..119999085
Genome browser
AA seq
2412 aa
AA seq
DB search
MLKFSSTTANQIRFLLQSLTEANADSVIQELSQFVENETEGSILLLQTCLDHLNRYRTDA
KNATLELVVAAIFKCLLDRPNFSTVFCESLRNSEISEAILENFSNALHLSVSENICIGLA
LSDSENFDTRICGKNFCMAQIEELCANPVALTSSEQILNIILFLQQSEGLSKHVDSFIQM
LSLVQPKDVSQFVLTPSVSDEQREANFLKNMDMLHEGEDNDFDAILAEMEKEMSLGDIMK
ELGYGCTVDASQCKEILSLFLPLNEITISKILGTITCSHAGLEDSQNTFPTFGMALGCNT
LSELPLLNSWNIDVLIDTIKQLAPSTNWIHVIENLDHEGFYIHNQEALSFFMSVYKRVSQ
EPFPLHAICGFVWKNTEGQLSFLKYAVSAPPEVFSFSHSARQLENIGPNFQVGHANHAWL
CLDLLDVLCQLSERGHASTVRSMLDYPLQHCPEVLLLGIAQINTAYNLLQHEVSTIVFPT
IVKNSMASSIILHLWHVNSKLVLRGFADTHKCDVDIITKILDLCQELKILSPVLDFTPSS
FSIKLAALASRKELVDLENWLSSNLNTYKDIFFEECLKFLKEIQFGGSHDFSTRPFQHSG
AISNLCADATSSFLKVLKAHAGLITSCQLSEELERVDVSIVDSNPRLQNGGTADSSTDGY
ADDIEAEANSYFHQMFSGNLTIVEMVQMLARFKESSVNRKNLIFECMIANLFEEYRFFPK
YPEKQLKIAAILFGSVIKHQLVTHLPLGIALRGVLDALRKPADSKMFVFGTKALEQFVDR
LIEWPQYCNHILQISHLRSTHLELVTFIEQALARISSGHSDSEGGNQASAHHHGPYQVAS
GHMDLNVPGTIHSGQQLSSSLQLQQRHESSFDDRHKVSVASSNDKPPLSSVGQTSGAPIG
EASGVQKLHNAISAPAMLSSSPGFIRPTRGVTSTRFGSALNIETLVAAAEKRDTPIEAPA
SEVQDKISFIINNISAANLEAKSKEFIDILKEQYYPWFAQYMVMKRASIEPNFHDLYLKF
LDKVNAKALNKEIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRA
REIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPN
LKMNLKFDIEVLFKNLSVDLKEITPTALLKDRKREIEGNPDFSNKDVGASQPQMVAEVKS
TLMSPLNQVELPLEVAPSSNSAGHTHLLSQYAAPLHLSSGTLMEDDKLAALGLSDQLPSA
QGLLQATPSQSPFSVSQLPTPVPNIGTHVIINQKLSALGLHLHFQRVVPIAMDRAIKEIV
SSIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGSLAHVTCKEPLRTSI
LSQLRNSLQGLNLASELLEQAVQIVTNDNLDLGCAVIEQAATDKAIQSIDGEINQQLSLR
RKHREGVGPTFFDANVYTQGSMGVVPESLRPKPGHLSLSQQRVYEDFVRLPLQNQSSQSS
HAVPAGASANAGLAGVSANAGLAGAYGTASTQLNPAYSSASGSTGFESVSRPPDEAIDSN
SALHLSASSLHVGVADAVTQHSSESDPVVGSFANVSAPPELHSVDSTDAAKESGASSQPL
PSPAAGERLASSLSEPSLSTRDALDKYQIVSQKLESLITNEAREAEIQGVVTEVPEIILK
CVSRDEAALAVAQKVFKGLYENASNHVHVGAHLTILTAIRDVCKLVVKELTSWVIYSDEE
RKFNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKAATDFAISLLQILAVEESKVISEL
HNLVEALAKLASKPGSPESLQQLVEMVKNPSANVAVSSGVNVGKDDKARQSRDKKAPGLP
VASREDLSSVESVEPDPAGFREQVSRLFAEWYRICELPGANDAACAHYILQLHQNGLLKG
DDVTERFFRLLTELSVAHCLSSEVINSGTLQAPLQGQSLSFLAIDIYAKIVFSILKQGTN
KPFLLSKILAVTVRFIQKDAEEKKSSFNPRPYFRLFINWLQDLGSIDPLVDGANFQILTA
FANAFHALQPLKVPAFSFAWLELVSHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFL
RNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN
MRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKTDVDEYLKTRQGSSFLTDLKQ
KLLLPPSEVAAAGTNYNVPLINSLVLYVGMQAIQQLQARTSHAQSSQNVPLAVFLVGAAL
DIFQALIVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPRYNFWNRGFIRCAPEIEKLFESVSRSCGGPKPVDE
SMVSNWVSENAH
NT seq
7239 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaattttcgtcaactactgccaatcagattcgctttctccttcaaagcctcacc
gaagcaaatgccgactctgttattcaggaactctcccagttcgttgaaaatgaaactgag
ggaagcattttgctgctccaaacgtgcctggatcatctgaatagatacaggacagacgcg
aagaatgcgaccctggaattggttgtagctgcaattttcaaatgtcttctggatagacct
aattttagtacggtgttttgtgagtcactaagaaattcagagatcagtgaagcaatactt
gagaatttctcaaatgcattgcacctgtccgtgtcagaaaacatttgcattggtcttgct
ttgtctgattccgaaaactttgacaccaggatatgtggcaagaacttttgtatggctcag
attgaagagttatgtgcaaatcctgtcgcacttacttcttctgagcaaattttgaatatc
attttgttcctccagcagtctgagggtctctccaagcatgtagattcgtttatacagatg
ttatctttggtgcagccgaaagatgtctcacaatttgttctgactccatctgtttcagat
gaacagcgagaggccaattttttgaagaatatggatatgttgcatgagggtgaagataat
gattttgatgccattttggctgaaatggagaaggaaatgagtttgggagatattatgaag
gagctaggttatggatgcacagttgatgcatcccagtgcaaggagattttatcccttttc
ttaccgctcaatgagatcactatttctaagatacttggaactataacctgctcccatgct
ggtcttgaggacagccagaacacatttccaacatttggcatggctcttggttgcaacact
ttgtctgaactgcctttgttgaatagttggaatatcgatgtccttatagatactatcaag
caactcgcacctagtaccaactggatacatgttattgaaaatttggatcacgagggattc
tatattcataatcaggaggcattatccttctttatgtctgtatataagcgcgtgtcccag
gagccattcccactacatgctatttgtgggtttgtttggaagaatactgagggtcaatta
tcatttcttaaatatgctgtatcagcaccacctgaagtatttagcttttctcattctgca
agacagctggagaatattggacccaattttcaagttggacatgcaaatcatgcatggtta
tgccttgacctattggacgtattgtgtcaactatctgagagaggtcatgcttctactgtt
cgatcaatgcttgattatcctcttcaacactgtcctgaagtcttgcttcttggaatcgca
caaataaatactgcatataacctgctccaacatgaagtgtctacgattgtatttcctacc
atagtgaagaattccatggctagtagcataattcttcatctttggcatgtaaattccaaa
ttggtgttgcggggatttgctgacactcacaaatgtgatgtagacattattacaaaaata
ttggacctttgccaagagctgaagatattgtcacctgtactagattttactccttcttca
tttagtatcaagttggcagcccttgcttctagaaaggagcttgtagaccttgaaaattgg
ctgagtagtaatttgaatacatacaaagatattttctttgaggagtgcctcaagttctta
aaggagatccagtttggtggatcacatgatttttccaccagacctttccaacattctggt
gccatctccaatctttgtgcggatgctactagttccttcttgaaggtccttaaagctcat
gctggattgatcacttcttgccaactttctgaggaactggaaagggtggatgtatcaatt
gtcgattctaatccaagacttcaaaatggtggaactgctgattcatcaactgatggatat
gctgatgacattgaagctgaagccaactcttacttccatcagatgttttctggtaatttg
accattgttgaaatggtgcagatgttagcccgcttcaaagaatcctctgtaaataggaag
aacttaatttttgagtgcatgatcgcaaatctgtttgaggagtacaggttctttccaaag
tatcctgaaaagcaattaaagattgctgccattctttttggctctgttatcaaacaccaa
cttgtaactcatcttccacttgggattgctcttcgtggtgttctggatgcattgcgcaaa
cctgcagattcaaaaatgtttgtgtttggtaccaaggctttggagcagtttgtggatcgc
cttatagagtggccgcaatactgcaatcatatcttacagatttcccatctacgcagtact
catttagagctagttactttcattgaacaggctcttgctaggatttcatcaggccattca
gactctgaagggggcaaccaggcttctgctcatcaccatggtccatatcaagtggcatca
ggacatatggatttgaatgtccctggtaccattcactctgggcagcaactctcttcttct
ctgcagcttcaacaaagacatgaaagctctttcgatgaccgtcataaggtctctgtggct
tcatccaatgacaaaccacctttatcttcggttgggcaaacgtcaggtgctcctattggt
gaagctagtggtgttcagaaattacataatgcaattagtgctccggcaatgctttcttct
tcccccggattcattcgtcctacaagaggagttacttccacaaggtttggctcagctctg
aacattgaaacattagttgctgctgcagagaagagagatactcctattgaggctccagca
tcagaggttcaggacaagatctcatttataattaataatatttctgctgctaatcttgaa
gctaaatcaaaggaattcattgacatattgaaagagcagtactatccctggtttgcgcaa
tatatggttatgaaaagggcaagtattgagcctaattttcatgatttgtacttgaaattc
ctggacaaagtgaatgcaaaggccttgaataaagagattattcaagccacttatgagaac
tgcaaggttcttttggggtcagagcttataaaatcaagttcagaagagcgttcattatta
aaaaatttaggaagctggcttggaaagttgacaataggaagaaaccaagttttacgggct
cgtgaaatagatcccaaatctttgattatagaggcatatgagaaggggttgatgattgca
gtaataccatttacatcaaaggttcttgaaccatgccaaagcagtctagcatatcagcct
cccaatccctggactatgggcattcttggattacttgctgaaatttattcgatgccaaac
ttgaaaatgaatctgaaatttgacattgaggttctattcaagaaccttagcgtggatttg
aaggagataacaccaaccgctcttctgaaggatcgcaagagagaaattgaaggaaatcct
gatttttctaataaagatgttggagcatcccaacctcaaatggttgctgaagttaaatca
accctaatgtctccactaaatcaagttgagctaccacttgaggttgctccttcatctaat
tctgctggacatacacatttattatctcagtatgctgctcctctacatctttcttctggt
acattaatggaggatgataagctggcagctttaggattgtctgatcagcttccatctgca
caaggactgttacaagctactccttctcagtcaccattctctgttagtcagcttcccaca
ccagtacctaacattggaactcatgtgatcatcaaccagaagctcagtgcattgggcctg
cacctgcattttcagagagttgttccaattgcaatggatagagctatcaaagagatagta
tctagtattgttcaacgtagtgtttctatagctactcaaacaactaaggagcttgtttta
aaggattatgccatggaatcggatgagacacgcatattcaatgcagcacacttgatggtt
gcaagtctggcaggaagtctagcgcatgtgacttgcaaggaacccttgcgaacttccata
ctgagtcaactaaggaattcacttcagggtttgaatcttgctagtgaacttctggaacaa
gcagttcaaattgttaccaatgacaatttggatcttggctgtgcagtcattgaacaggct
gcaacggataaggccatacaaagcattgatggggaaataaatcaacaactttcattgaga
aggaagcatagagaaggggttggtcccaccttttttgatgctaacgtgtatacgcaagga
tctatgggtgttgtgccagagtctcttcgtcctaaacctggtcatttgtcactttctcaa
cagagagtatatgaggactttgtccggcttcctttgcaaaatcaatctagtcagagttcg
catgctgttcctgctggtgcttctgcaaatgctggtctagctggtgtctctgcaaatgct
ggtctagctggtgcttatggtacagcgtcaacacaacttaatccagcctattcttctgca
tccggaagcactggatttgaatctgtctcccgtccgccggacgaggctattgattctaat
tcagccctgcatcttagtgcttcttcattgcatgttggtgtggctgatgctgttactcaa
catagttctgaaagtgatcctgttgttggttcatttgctaatgtttctgctccgcccgag
ttacattcagtggattccactgatgctgctaaggaatctggagcttcttcgcagccattg
ccttcacctgctgctggtgagcgtcttgcaagtagcttatcagaaccttcacttagtacg
agggacgcattggataaataccagattgtttcacaaaagcttgaatctttgataacaaat
gaagctagagaagcagaaattcagggagttgttactgaagttcctgagatcatacttaaa
tgtgtaagtcgcgatgaggctgccttagctgtagctcaaaaggttttcaagggtttatat
gaaaacgcttcaaaccatgttcatgttggtgctcatctcacgatccttactgctattcgt
gatgtgtgcaagctagttgtcaaggagctcactagttgggtgatttattctgatgaggag
cgaaagtttaacaaagatatcactgttggccttatccgcagtgaattgttaaaccttgca
gagtataatgtgcatatggcaaaacttattgatggagggaggaataaggctgcaacggat
tttgctatttcgcttcttcaaatattggcagtggaagaatcaaaagtaatttcggaactt
cataatcttgtagaggcattagcaaagcttgcttcaaagcctgggtcacccgagtcattg
caacagttggttgagatggtcaagaatccttctgcaaatgtggctgtttcttctggtgtt
aatgttgggaaggatgacaaggctcgacaatctagagacaagaaagctcctggtctccct
gtggcgagtagggaagacttgagtagtgtagagtctgttgaaccagatcctgctggtttc
cgtgagcaggtttcgaggctgtttgcagagtggtaccggatttgtgaacttcctggtgca
aatgatgcagcttgtgcgcattacattttacagttgcatcaaaatggattgctgaagggg
gatgatgtaacagagagattttttcgcctccttactgaactttctgttgcacattgccta
tcttctgaggtaattaattcaggcacattgcaagcacctcttcaagggcagagtttgtct
ttccttgccattgatatctatgcaaaaattgtcttttcaattctgaagcagggaaccaat
aaaccatttctcctgtctaagattctggcagttaccgtcagattcattcaaaaagatgct
gaagagaagaaatcatcttttaatccaagaccatattttagattgtttatcaattggctt
caggatcttggctccatagacccccttgtagatggtgcaaactttcagattttgacagca
tttgcaaatgcatttcatgctttgcagcctcttaaagttcctgcattcagctttgcatgg
cttgagttggtgagccacaggagtttcatgccaaaaatgctgacagggaatggtcagaag
ggttggccctatatccaacgattgctggtagacttgttccaattcatggagccattcttg
agaaatgccgaacttggagttccggttcattttctgtataaaggcacacttagggtgttg
ctagtgctgcttcatgatttccccgagtttttgtgtgattatcattttaccttctgtgat
gttattcctccaagctgcattcaaatgagaaatattattctaagtgcatttccccgcaat
atgaggctgccagatccatctactcctaacttaaagattgatttgcttgcagaaatcagc
caatctcctcgcattctatcggaggttgatgcagctttaaaggcaaagcagatgaagact
gatgtggatgagtatctcaagacaaggcaaggttcctcatttttgactgatctgaaacag
aagttgctccttccacccagtgaagttgctgcagctggcaccaattataatgtacccttg
atcaactcccttgtgctttatgttggcatgcaggccatccagcagcttcaggctagaact
tctcatgcacaaagcagccaaaatgttccacttgctgtattcttggtgggtgctgcctta
gatatattccaggctctaatagtggacctagatactgaaggacgctatctattcctaaat
gcggtggctaaccaactccgctatccaaacactcatacacattacttttctttcatcctt
ctttacttgtttgccgagtccaatcaggaaattatccaggagcaaattacaagagtcttg
ttggaacgtttaattgttaaccggcctcatccttggggtcttcttattacatttattgag
cttattaagaatccaaggtacaacttctggaaccgaggtttcattaggtgtgcaccagaa
attgaaaagctttttgaatctgtgtcaagatcttgtgggggcccgaaacctgtggatgag
agtatggtgtccaattgggtatctgagaatgcgcactaa
DBGET
integrated database retrieval system
