KEGG   Humulus lupulus (common hop): 133797262
Entry
133797262         CDS       T11341                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
hlp  Humulus lupulus (common hop)
Pathway
hlp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hlp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133797262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hlp03019]
    133797262
Messenger RNA biogenesis [BR:hlp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     133797262
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WD40_Gbeta EIF3I WDR55 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_C DSE1_N WD40_MABP1-WDR62_1st NBCH_WD40 WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_Vps41 eIF2A Beta-prop_VPS8 Beta-prop_DCAF12 Ge1_WD40 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_WDR41 CFAP251_N Tricorn_2nd Beta-prop_WDR11_1st Cytochrom_D1 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_SPT8 TRM82_WD Beta-prop_WDR75_2nd PD40 Beta-prop_SCAP CFAP43_N DUF5711 ASA1 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 133797262
NCBI-ProteinID: XP_062091097
LinkDB
Position
8:53763807..53765466
AA seq 317 aa
MKLAGLKSFENAHEESIWAATWVPATETRSALLLTGSLDETVKLWKPDELVLQRTNTGHC
LGVVSVAAHPSGHFAASASLDSFVRVFDVDTNNTIASLEAPPSEVWQMQFDPKGTILAVA
GGGSASVKLWDTATWNLVATLSIPRPEAPKPSEKHSSKKFVLSVAWSPDGRRLACGSMDG
TISVFDIGRAKFLHHLEGHFMPVRTLAYSPTEPRLLFSASDDAHVHMYDAEGKTLVGAMS
GHASWVLSVDVSPDGTAIATGSSDRTVRLWDIGMRAAVQTMSNHADQVWGVSFGPAGGPG
RLASVSDDKSISLYDFS
NT seq 954 nt   +upstreamnt  +downstreamnt
atgaaactcgcgggactaaaatcgttcgagaacgcccacgaggagtccatctgggcggcg
acgtgggtcccggctacggagacccgatccgccctgctgctgaccggctccctcgacgag
accgtcaagctatggaagcccgatgagctggtcctccagcgaaccaataccggccactgc
cttggagtggtctccgtcgccgctcacccttccggccactttgccgcctccgcctccctc
gacagcttcgttagggtttttgatgtcgacaccaacaacaccatagctagtctcgaagcc
cctccttccgaagtctggcaaatgcaatttgatcccaagggcaccatcctagcagttgcc
ggtgggggcagtgcatcagtgaagctttgggacacagcgacatggaatttagttgccact
ttatctattcctcggcctgaagcaccaaagccctctgagaaacacagcagcaagaagttc
gttctgtcagttgcctggagtccggatggaaggcggcttgcttgtggctctatggacgga
actatttccgtgttcgacattggccgtgccaagtttcttcaccacctggaaggccacttc
atgcccgtacgtacactggcatattctcccaccgaaccaaggttgctgttttcggcctca
gatgatgcccatgtacacatgtatgatgctgagggaaagactcttgttggagccatgtca
gggcacgcgagctgggtgctgagtgtggatgttagcccagatgggactgctattgcaaca
ggatcaagtgaccgaacagtgaggctatgggatatcggcatgagggctgctgtccagaca
atgagcaaccacgctgaccaagtttggggagtgtcctttggaccagccggagggcctggt
cggcttgcaagtgtatcggatgacaagagtatatccttatatgacttctcctga

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