Humulus lupulus (common hop): 133801440
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Entry
133801440 CDS
T11341
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133801440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133801440
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133801440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_8
TPR_16
TPR_14
TPR_6
TPR_19
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_7
BTAD
Motif
Other DBs
NCBI-GeneID:
133801440
NCBI-ProteinID:
XP_062095630
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All DBs
Position
9:complement(182041063..182043957)
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AA seq
912 aa
AA seq
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MEGEKMAELRRLEESVQVNPDDYSVQFDLGLFLWKNWDENEESKSVRSFKQQAAEHFLAS
ARLNPQNGAAFRYLGHYYGEHSLDPHRAIKCYQRALSLDPDDSLSGEPLCDLFDRLGRET
LEAAVCREASHKSPRAFWAFRRLGYLQLHQRKWSEAVQSLQHAIRGYPASADLWEALGLA
YNRLGRFTAAIKSYGKAIELEPIKVFALVESGNISLMLGSFKKGIEQFRRALEISPECIS
ANYGLASGLLGWAKECICLGAFQWGATLLEEASKVAKESTRFAGNLSCIWKLHGDIQLTY
AKCYPWMEESQNLEHNVSVEAFNVSINAWKNARCLAATSARLSYQRALLLAPWEANIYTD
VAISSDIINTFTKCSDFDINAWQPPEKMALGALLLEPENYEFWVALGCLSNYNPLKQHSL
IRGLQLDVSLAVAWSYLGKIYRGLDEKQQARLAFDCSRSIDPSLALPWAGMSADFHAREP
ALDEAFESCLRAVQTLPDAEFQTGLAKLAVVSGHLSSPQVFGAIKQAVQRAPYYPESHNL
KGLVCEARFEYQTAATSYRLALCALTNLSAGFSKSQIRDVSINLARSLFKAGNALDAVEE
CENLKKEGLLDEEGLQIYALSLWKLGQTNLALSVAKNLAANVSTMEHNSIAAPISLICRL
LYYISGLDSAINIILKMPKKLFQSSKTSFIVSAIHALDGSNRLESVVSSSRKSVKSHEDI
SRMHFLIALGKLLKNGSGQSIGLQSGVAHLRKVIHMYPNSCLLRNLLSYFLLSGEEEGND
NTHLATRCCNVNAYCSQIDDGLKSAYEIVGAGAVACYAFGSDNECLNELGAIQQLQKCLR
REPWNRGVRYLLILNLFQKARRERFPCNLCTMLERLISVALSNECYSETEAYQYEKFQLL
LCASEISLQSGT
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagaaaagatggccgagttgcgacgcctggaggagtccgttcaggtcaatccc
gatgattactctgttcaatttgatctgggtctttttctgtggaagaattgggatgagaat
gaggagagtaagtcggtcagatcattcaaacaacaagcggcggagcacttcttagcctcc
gccagactcaacccccaaaacggcgccgcattcagatacttagggcattactacggcgaa
cactccctcgatcctcatagggctatcaagtgttaccagagagctctctcccttgatcct
gacgattctctttctggggaacccttgtgtgatttattcgaccgcttaggaagggagacc
ttagaggccgccgtctgccgtgaagcttctcacaagtctcccagggccttttgggccttt
cggagattgggttacttgcaactccatcagcgtaaatggtccgaagctgtgcagagtctt
caacatgccattagaggatatcctgcttctgctgatctatgggaggctcttgggcttgcc
tataacagactaggcaggtttaccgctgctatcaagtcctatgggaaagccattgaattg
gaaccgatcaaagtctttgctttggttgaaagtggaaacatttctttgatgcttggttca
ttcaaaaagggaattgagcagttccgtcgtgctctggagatttcacctgaatgcatatct
gcaaactacggacttgcttccgggttgcttggttgggccaaggaatgtatttgtttggga
gcgtttcaatggggagctacattgttagaagaagcatctaaagttgccaaagaaagtaca
cgctttgctggaaatttatcatgtatttggaagctgcacggtgatattcaactcacgtat
gctaaatgttatccatggatggaagagagtcagaatttagaacataatgttagcgttgaa
gcttttaatgtctccatcaatgcctggaaaaatgctcgctgtttggctgcaacttctgct
agactctcatatcagcgagctttgctcttggccccatgggaagctaatatctatacagat
gtagcaataagttcagatattatcaacactttcaccaagtgttctgattttgacataaat
gcttggcagccaccagagaagatggccttgggggccttgttacttgaacctgaaaattat
gagttctgggtggctttggggtgtttatctaattataatccattgaaacaacattctttg
attcggggtttgcaattggatgtatctctagctgttgcttggtcatacttaggcaagatc
tataggggtttggatgagaagcaacaggcaagacttgcttttgattgttccagaagcata
gatccttcacttgcattaccatgggctggcatgtcagctgattttcatgctagggagcct
gcactagatgaagcttttgagagttgtttacgagctgttcagacacttcctgatgcagaa
ttccaaaccggtctcgcaaagcttgctgtagtttcggggcatctttcatctccacaggtt
tttggagctatcaagcaggccgtgcagcgcgcgccttactatcccgagtctcataattta
aaagggctggtttgtgaggcacgatttgagtatcaaactgctgctacttcctataggcta
gcactctgtgcactcaccaatctttcagccggtttttcaaaatctcaaatcagagatgta
tcaattaatttggccagatcacttttcaaggcagggaatgctcttgatgctgtagaggaa
tgtgaaaacttaaagaaagaaggattgcttgatgaggaaggtctgcaaatatatgcttta
tccttatggaaacttggtcaaactaatttggccctttctgtggcaaaaaatcttgctgct
aatgtatctactatggagcataattctattgctgcccctattagtttaatctgcaggttg
ctctattacatttctggattagattcagcaatcaatattattcttaaaatgccaaagaaa
ctgtttcagagttcaaaaaccagctttatagtgtctgccattcatgctcttgatggaagc
aatcgactcgagtcagttgtttcgagtagtcgtaagagtgttaaatcacatgaagatata
agcagaatgcactttctaatagcacttggtaaactattgaaaaatggatcaggacaatct
attggattacagagtggagtggctcatcttagaaaagttatccacatgtatcctaacagt
tgtttgttaaggaatctactaagttactttttgctgtctggtgaagaggaggggaatgat
aatactcaccttgctactaggtgctgtaatgtgaatgcttattgctctcaaattgatgat
ggtttgaaatcagcatatgaaattgttggtgctggagcagttgcttgctatgcatttggc
agtgataatgaatgtctgaatgaactcggagccatccagcaactgcagaaatgcttacgc
cgagagccatggaataggggtgtgagatatttacttattctcaatttattccagaaagca
agaagagaaagatttccttgtaatctatgtactatgcttgagcggctaatttctgtggct
ctttcaaatgaatgttattctgagactgaagcttatcaatatgaaaaattccagcttcta
ctttgtgcttctgaaatcagtttgcaaagtggaacttga
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