Humulus lupulus (common hop): 133803538
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Entry
133803538 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133803538
KO
K19026
spatacsin
Organism
hlp Humulus lupulus (common hop)
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133803538
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
133803538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
133803538
NCBI-ProteinID:
XP_062097607
LinkDB
All DBs
Position
1:complement(219985245..220025628)
Genome browser
AA seq
3204 aa
AA seq
DB search
MNPSSNGEGPAILQLHKWDSSYPKLNLSEFREAFISPTRQQLLLLSRQNEALLMPLLTED
CGVINDELKNNCSENVYYPSSALDPRRDDMPCPSGSVVDFDSGFSFESESLSGRSAFLGD
VYSVAWGVCGDTYNQHKDALFREFLFVSGNHGVTVHAFCENTTLSRSSETASQGKFEQGE
WVEWGPSVTLVSNEKVDEPFSSFHETNRNVEHVNTTNGNSESPQGNEFSRGIDSKLWLQS
FLANVEDFESDGKRWTRFPEKSSFPSSAKVVSFHIFNSDFPFKDFVPHSNSLLKEYLKEK
VHDSGGDGPAKLNSTSSCSSFEPDVLSNSFGVGISSMYKCFRVFSSNSHYVGFSLTLADP
VTIDKSDESTRSLYRNLVLVAMLDKWAIQWVSLVKLEENQNIGPLVEWTDFCFFNNLLVA
LTSSGFVVFYSAMSGEYVVRINILQTCEFKSNMELCEQAKMSVGVVRKNIEVEKALDKRV
FNRLIPASHTSMLAAVDECGVVYVICADQYLGDRDEKLFPHCQHIGLGILAGWEVGGSCI
CCQRLYSKFSGSHDPSFSYMWSRYHSFLSNGGNRVLQEIQQWNLHGNGMQQYTKCLSGFF
AAYEMTNQTLHDAVVKSCHMRRIFLPTNRVNEDDSICFSPFGITRLIRKHNMKDQNGSQI
VHFNLLMESATCDDSGLLMECEMYLRNGRKEYFTGDAVGCTFQGCFYLVTESGLSVVLPS
ISVSSSFLPIEFIGYRQWSINSGSVYKEKDSMEIRNFRHPSSPWTIEVLDRVLLYDSVEE
ADRLCFENGWDLKIPRMRRLQLALDYLKFDDIEQCLEMLVGINLAEEGILRLLFASVYLM
LRKSGNDNDVSAASRLLTLASRFATKMIRTYGLLDRENNAYLSHSFGWTEVRHLPLLLHD
KSQNEVGTSRRLREMAHFLEIIRNLQSRLSSKLKRPGQGLVNGGDESGLVPADLSLDESK
LAIFSSNTLSLETVNQNDNSFPVSAVGSNYAENLALAHMDVKAQVDPGNLHEVSAIVSRE
GLLQNKILSLENPKEMIARWKIDNLDLKTVVNDALLSGRLPLAVLQLHLYHSRDLISDKE
PHDTFNEVRDIGRAIAYDLFLKGETGLAVATLQRLGEDVETSLKELLFGTVRRSLRAQIF
DEMKRYGYLGPYEWKIMDRISLIERLYPSSCFWNAFNGRQKEYTRIPASSHSPRKNYLQL
LHSNVFNNFTIECGEIDGVVLGSWTNVNENPSVPVVEDENVLGGYWAAPAVWCNVWDQRT
IDRIVLDQSSVIDVDVLWESQLDYYMSRGDWDRVSKLLDLIPELSLEDGNLQVSLDSPQA
ASTVGCAMESLMHRDYFSALEELDTVCMHIPNVKLLKFPDNIMGSTWIKMKMEKKLAKKL
IFLKEFWEGTAEIVHLLACAGFVTNRYEILTNAEAVESSSNSNFSDGGAFDFDTVQALHK
VVIRYCVQCNLPHLLDLYLDKHMLVLDNGSLSLLLDAAGDCEWAKWLMLSRVKGCEYDAS
FSNARSVTSRGIVPSTDLLEMDEIIRTVDDIAEGGGELAALATLMHAPVPIQNCLSSGGV
KRHSNSSFQCTLENLKPALQSFPTLWRTLVSACFGQDSTSSFVGSRGKNALSDYLSWRDS
VFFSSGRDTSLLQMLPCWLPKAVRRLVQIYVQGPLGWQSMSGLPLGETLRHREIDFFANV
DENSEINAISWEATIQKHVEQELCDPTLEETGLGLEHHLHRGRALSSFNRLLSVRIQNLK
AEGQSGDLTQGQTNIQSDLQRLLAPLTETEISLLSSVMPLAIMHFEDSILVASCSFLLEL
CGLSASMLRMDIAALRRISSYYKSDGSNYNQRKVSPNSVSREGDMVESLARALADDYLHQ
ESVTKPKKTPSLVDGKQSSRALIHVLHHLEKVSLPLMVEGKTCGSWLLSGNGDGIELRSQ
QKTVSQHWNLVTVFCQMHQLPLSTKYLAVLARDNDWVGFLSEAQTGGYPFDAVINVASKE
FSDPRLRIHILTVLKGMQSRRKASTSYADNTERRTETFFADEQICYPVELFRILAECERQ
KNPGETLLKKAKDLSWSILAMIASCFSDVSPLSCLTVWLEITAARETSSIKVNDIASQIA
DNVAAAVEATNSLPTEGRVLTIHYNRRNPKRRCIMGSMPRDTSASADISTSPLGVKAFPA
RGFMVEEERNIELHDTDEGHVSLSKMVAVLCEQHLFLPLLRAFEMFLPSCSFLPFIRALQ
AFSQMRLSEASAHLGSFSARIKEEPTHLQSNMGREGQIGISWISSMAVKAADAMLLTCPS
PYEKRCLLKLLAATDFGDGGSSATHYRQLYWKINLAEPSLRKDELLQLGNETLDDASLLT
ALEKNGLWDQARNWAKQLEASGGHWKSVVHHVTETQAESMVAEWKEFLWDVPEERVALWG
HCQTLFIRYSFPALQAGLFFLKHAEAVEKDLPARELHELLLLSLQWLSGMMTLCSPVYPL
NLLREIETKVWLLAVESEAQVKSEGELNLTNSIRDPINKNCSSIIDRTANIIIKMDNHIN
TSKSRSTEKHEIRENYQGNYKNPSDASFFTTAGGTTKTKRRAKGFVTSRRQLVDPIDRSV
ESDEVPCSLYCKNEMPLQDDNVRTGMSFSRWEERVGTAELERAVLSLLEFGQISAAKQLQ
HKLSPAQVPSEFILVDAALKLAALSTPSELVSISMLDEEIRLVMHSYNILTDQHQIEPVQ
VLESLATIFIEGRGRGLCKRIIAVVKAANVLGLAFSEAFDKQPIELLQLLSLKAQESFEE
ANLLVKTHPMPAANIAQILAESFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLKWAEL
CPSEPEIGHALMRMVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLVALAATRVDAY
VSEGDFSCLARLITGVGNFHALNFILGILIENGQLDLLLQKYSAATDTNTSAVRGFRMAV
LTALKHFNPNDVDAFAMVYNHFDMKHETAALLESRADQSSAQWFGRKDNDQNEDLLDAMR
YFIEAAEVHSSLDAGNKARRACAQASLLSLQIRMPDIQWLYLSETNARRVLVEQSRFQEA
LIVAEAYGLNQPSEWALVLWNQMFKPELLEFVAEFVAVLPLQSAMLTDLAKFYRAELAAR
GDQSQFSVWLTGGVPGDWAKYLGRSFRCLLRRTRDLKLRHSLAQMATGFSDVINTCNKLL
DKVPENAGPLVLKRGHGGAYLPLM
NT seq
9615 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttcttcgaatggtgagggacctgctatactgcagttgcataaatgggactca
tcttatcctaaactaaacttgtcagagtttcgtgaagcgtttatttctcccacaaggcag
cagttattgttgctttccaggcagaatgaagctttgttgatgcctctccttacagaagat
tgtggagtgattaatgatgaactgaagaataattgtagtgaaaatgtttactatccaagt
tcagctttagatccaagaagagatgatatgccatgcccttctggatcagtagtagatttt
gatagtggtttctcttttgaaagtgaatcattatctggaaggtctgcctttttaggtgat
gtatactctgttgcctggggtgtttgtggggatacatataatcagcacaaggatgcttta
tttagagagtttttgtttgtatctggtaaccatggtgtgacagttcatgccttttgtgaa
aacactacattatccagaagttctgaaactgcatcacagggcaagtttgagcaaggtgag
tgggtggaatgggggccttctgtcacattggtttcgaatgaaaaggtagatgaacccttt
agttcatttcatgaaaccaataggaatgttgaacatgtaaatacaaccaatggaaatagt
gaaagtccacaaggaaatgagttttcaagaggtattgattcgaagttatggttgcaatct
tttcttgctaatgttgaagattttgaatctgatggtaaaagatggaccagatttcctgag
aagtcatcgtttccttcctcagccaaggttgtttcatttcacatttttaatagtgatttt
cctttcaaagactttgtacctcatagtaactctttgttaaaggagtacctgaaggaaaag
gtacatgattcaggtggtgatgggcctgcaaaattaaattcaacttcatcttgttctagt
tttgagccagatgttttgtctaattctttcggtgttgggataagcagtatgtacaaatgc
ttcagagtattctccagcaattcacactatgttggattttctttgacattggcggaccct
gtaactattgataagagtgatgaaagtactagaagcctgtacagaaacttagtccttgtt
gcaatgttagacaaatgggcaatccagtgggtttccttagttaagctggaggaaaatcaa
aatataggcccactggttgagtggacggatttttgtttttttaataatcttcttgttgct
ctcacttcttctggctttgttgttttttattctgcaatgtcaggtgagtatgttgtgcgt
ataaatatattacagacttgtgaatttaaatctaatatggaattgtgtgagcaagccaaa
atgtctgtaggcgtggttagaaaaaatattgaagttgaaaaggctcttgataagagagta
tttaataggttgattcctgcttcacatacctctatgttagcagcagttgatgagtgtggt
gtagtttatgtgatatgtgctgatcaatatttgggggatagagatgagaaattgtttcca
cattgtcaacatattggacttggaattttggctggttgggaggtgggtggttcctgtata
tgttgccaaaggttatattctaagttttctggttctcacgaccctagtttttcatatatg
tggagcagatatcattctttcttaagtaatggtggaaatcgtgtacttcaagaaatacag
cagtggaaccttcatggaaacggaatgcagcaatacacaaaatgtttaagtggtttcttt
gcagcttatgagatgaccaatcagacccttcatgatgctgtagtgaagtcctgtcatatg
cgcagaatatttcttcccacaaatagagttaatgaggatgattctatctgtttttccccg
tttggaataacccgtctcattagaaagcacaacatgaaagatcaaaatggttctcaaatt
gttcattttaatcttcttatggagtcagcaacttgtgatgatagtggcttgcttatggaa
tgtgaaatgtatctccgcaatggaagaaaagaatattttactggagatgcagttggttgc
actttccaaggctgtttttaccttgtgacagaaagtggcctctcagtggttctgccctct
atttcagtttcatcaagtttccttcctattgaattcataggatacaggcagtggagtatc
aactcaggcagtgtatataaagaaaaagacagtatggaaattagaaattttagacaccct
tcctcaccctggaccattgaagttcttgatagggttcttttatatgacagtgttgaagag
gcagatcgcttatgttttgaaaatggctgggatttgaaaataccccgaatgcgtcgattg
cagttggctttggactacctgaaatttgatgacatagagcaatgtttagaaatgcttgtg
ggcatcaacttagcagaagaaggcattctgcgactgctgtttgcttcagtttatctgatg
cttcgtaaaagtggcaatgataatgatgtttctgctgcatcaaggcttcttaccttggct
agtcgctttgctaccaaaatgattcgcacatatggattgctagatcgtgaaaataatgca
tatttatcacatagttttgggtggactgaagtacgtcatcttccactgctcttacatgat
aaatctcaaaatgaagttggaacttccagaaggcttcgtgagatggctcattttttggaa
ataataagaaatctacaatctcgacttagttcaaaattgaagaggcctggccaaggattg
gttaatggtggggatgagtcaggactggtgcctgcagatttatcattggatgagtccaaa
cttgcaattttttcttcaaacaccctatctttggagacagtaaatcaaaatgataattct
tttccagtatctgctgtgggatctaattatgctgagaatcttgctttggctcatatggat
gtcaaagctcaagtggacccaggtaatttgcatgaagtatctgcaattgtttctcgagaa
ggactcctgcaaaataaaattctttccttggaaaatcccaaggaaatgattgcacgttgg
aagatagataatttggaccttaaaactgtggtcaatgatgctttactatctggacgtctg
cccttggcagttcttcaacttcatctttatcattcaagagatttaatttctgacaaagag
ccccatgatacttttaatgaagttcgtgacattggaagagcgattgcatatgacctattt
ttgaagggtgaaactggacttgctgtggccacgttgcaaaggcttggagaggatgttgaa
acaagcctcaaggagttattgtttggcacagtaaggagatctcttcgagcacaaatcttt
gatgaaatgaaaagatatggttacctgggaccatatgagtggaagattatggatagaata
tctctcattgagaggctctatcctagcagctgcttctggaatgcatttaatggacggcag
aaagaatacacgaggattccagcaagttcacattcaccaaggaaaaattatttgcagctg
ttgcattctaatgtattcaacaatttcaccatcgagtgcggtgaaattgatggggttgtt
ttgggttcatggactaatgtcaatgaaaacccttctgttcctgtagttgaagatgaaaat
gttctgggtggatactgggcagcacctgctgtctggtgtaatgtctgggaccagagaacc
attgatcgtatagttttggatcagtcttcggttatagatgttgatgtactgtgggaatca
caacttgattactacatgagccgtggtgactgggacagagtctccaaactcctcgaccta
attcctgaactaagtttggaagatggaaacctccaagtcagcttggacagtccccaagct
gcttcaactgttggatgtgctatggaatctctaatgcatcgcgattacttctctgctctt
gaagaattggatactgtgtgtatgcatattccaaatgtaaaacttttgaaatttccagat
aatattatgggctctacttggataaagatgaaaatggagaagaagcttgcaaagaaactt
atctttttaaaggaattctgggaaggcactgcagagatagtacatcttctggcttgtgct
ggctttgttacaaatcgatatgaaatccttacaaatgccgaggctgttgagagttcatca
aattcaaatttctccgatggtggagcatttgattttgatacagttcaggctcttcacaaa
gtagttatacgttactgtgtccagtgcaacttgccacaccttttggacctttaccttgac
aagcacatgctggttctagataatggttcactttctttgctactggatgctgctggagat
tgtgaatgggcaaaatggctgatgttatctagagtcaaggggtgtgagtatgatgcatca
ttttctaatgctcgttcggtaacgtcacgtggcatagttccttctactgatctgcttgag
atggatgaaataattcgtactgtagatgatattgcagaaggagggggagaactggcagct
ttggcaacgcttatgcatgcccctgttcctattcagaattgtttgagtagtggtggagta
aagaggcatagtaactcctcattccagtgcacgttagagaacctcaagcccgcgttgcaa
agtttccccacattgtggcgcacacttgtgtcggcatgttttggacaagattcaacttct
agttttgtgggttctagaggaaagaatgctttatcagactacttaagttggcgcgacagt
gtattcttctcttctggacgtgacacttcacttctccaaatgctcccttgctggcttcct
aaggccgtgcgaagattagttcagatttatgttcaggggccacttggatggcaatcaatg
tctggcttaccacttggagaaactttgcggcatagggagattgatttttttgcaaatgtt
gatgagaactctgagatcaatgcaatctcatgggaagcaactatccaaaagcatgttgaa
caggaactctgtgatcctacccttgaggaaactggacttgggcttgagcaccacttgcat
cgaggccgagctttatcttcttttaaccgtcttctttctgttagaattcaaaatttaaaa
gcagaagggcaatctggtgatttgacacaaggacaaacaaatatccaatcagatttgcaa
agacttcttgcacctctaacagaaactgaaatctctctcctttcatctgttatgccactt
gctattatgcattttgaggattccatcttggtggcttcatgttcttttcttctagagctc
tgtggtttatctgcaagcatgcttcgtatggatatcgcagctttaagacggatatcatct
tactacaagtctgatggaagtaattataatcaaaggaaagtttcacctaattctgtttcc
cgagaaggtgatatggttgagtctcttgctcgtgctctggcagatgattatttgcaccag
gaaagtgtaactaagccaaaaaaaactccgagtttagttgatggcaaacaatcttcacga
gctctcattcatgttctgcatcatttagaaaaggttagtctccctttgatggtggaggga
aagacatgtggatcttggcttttgagtggcaatggagatggaattgagttgagatctcaa
caaaaaactgtcagccagcactggaatttagttacagttttctgtcagatgcatcaactt
cccttgagcacaaagtaccttgctgtactagcaagagacaatgattgggttggatttttg
tctgaagctcagactggtggatatccttttgatgcagtaatcaatgtggcatcaaaggag
tttagtgatccacgtcttagaattcacattttaacagttttgaaggggatgcagtcaaga
agaaaagctagcacatcttatgcagataatacagagagaaggactgaaactttctttgca
gatgaacaaatttgttaccctgttgaattgtttagaattttagcagaatgtgagaggcag
aaaaatcctggggaaaccctcttgaaaaaagcaaaggacttgtcctggtcaattttggca
atgattgcatcatgcttttcagatgtgtctcccttgtcctgcttgacagtgtggctggaa
attactgcagcaagggaaacatcttccattaaggtaaacgatatagcttcccaaattgcg
gataatgttgcagcggcagttgaagctactaattctcttccaacagaaggcagagtgctt
acaattcattacaaccgtcgtaatccaaaacgtaggtgcattatggggtccatgccaaga
gatacgtcagcttctgctgatatttcaactagtcccttgggtgtaaaagcatttcctgcc
cgaggtttcatggttgaagaggaaagaaacatagaacttcatgacactgacgaaggacat
gtttctctctctaagatggttgcagttctttgtgaacaacacttattcttgcctttgtta
agggcatttgaaatgttcctaccttcttgttctttcttacctttcatacgtgctcttcag
gcattttcacaaatgcgcctatctgaagcatcagcacatttgggttccttttctgcccga
attaaagaagaaccaacacatttgcagagtaatatgggaagagaaggccagattggaata
tcatggataagctcaatggctgttaaagctgcagatgctatgcttttaacttgtccatcc
ccttatgaaaaaagatgcttgctaaaacttcttgctgcaactgacttcggtgatggagga
tcatcagctacacattaccggcaactttattggaaaattaatttagctgagccttcacta
cgcaaagatgagcttttacaacttggaaatgaaactttagatgatgcatcacttctcaca
gcattagaaaagaatggtctctgggaccaagcacgtaactgggccaagcagttggaggcc
agcggtggacattggaaatctgttgttcatcatgttactgaaactcaggctgaatctatg
gtagctgaatggaaggagtttctttgggatgttccagaagagagagttgctttatggggc
cattgtcagacactgttcataagatattctttccctgctttacaagcggggttatttttt
cttaaacatgcagaagctgtggaaaaggatctcccagccagagagcttcacgaattgtta
ttgctttctttacaatggttaagtgggatgatgaccctgtgcagcccagtatacccattg
aatcttctgcgggaaattgagactaaagtttggctcttggccgtagaatccgaagcacag
gtgaagagtgaaggagaactcaatttgaccaattccattcgtgacccaattaataaaaat
tgctccagtatcattgaccggacagcaaatataattataaaaatggataatcatattaat
acaagcaagagtagaagtacagagaaacatgagataagggaaaattaccagggtaattac
aagaacccatcagatgctagcttttttactacagcaggtggaactacaaagacaaaaagg
agggcaaaaggatttgtgacatctagacgacaattagtggacccaatagacagaagtgtt
gaatctgatgaagttccctgttctctctactgtaaaaatgaaatgccattgcaggatgat
aatgtcagaacgggtatgtctttttctagatgggaggaaagagttggaactgctgagttg
gagagggctgttctttcattgttagaatttggacaaatatcagctgccaagcaactccaa
cataaactatctccagcacaagttccttctgaattcatacttgtggatgctgctttgaag
cttgctgctctttcaactccgagtgaactagtatccatatcaatgctggatgaggaaata
cgtttagttatgcattcgtataacatactgactgatcagcatcagattgaaccggtgcag
gttttagagagcttagcaaccatcttcattgaaggtagaggccgtggcctgtgcaaaaga
ataatagcagttgtgaaagctgcaaatgtcctgggtcttgccttctctgaagcttttgat
aaacagccaattgaattactacagcttctttcacttaaagcccaagaatcatttgaggaa
gcaaatcttcttgtgaaaacccatcctatgccagcagctaatattgctcaaattcttgca
gagtcttttctaaagggcttactggctgctcatcgtgggggatatatggattctcaaaag
gaggaaggacctgctccattattatggaggttttcagatttcttgaagtgggcagagctt
tgcccgtctgaacctgaaattggccatgcattgatgcgtatggtaattactggacaagag
ataccgcatgcatgtgaggttgagcttctcattttgtcccaccacttctacaaatcatca
gcttgccttgatggagttgatgttcttgtagcccttgcagcaaccagggtggatgcttat
gtctcggagggtgatttttcatgtctggctcgcctcataacaggggtgggaaacttccat
gccctgaattttatacttggcattcttatagaaaatggtcagctggatcttcttcttcaa
aagtattctgctgccacggacacaaacactagcgctgtcagggggtttcgcatggctgtt
cttacagcactgaagcattttaatcctaatgacgttgacgcatttgcgatggtctacaac
cattttgacatgaaacatgaaacagctgctcttttagagtctcgagcagatcagtcttct
gcccagtggtttggtcgtaaagacaatgaccagaatgaagacctattagatgctatgcgc
tatttcattgaagctgctgaagttcactcttcccttgatgctggcaacaaagcacgtaga
gcttgtgctcaggcttctctactgtcactccaaatccggatgcctgacattcaatggctt
tacctgtcagagaccaatgccaggagagtcttagttgagcaatcccgttttcaagaggca
ctaatagttgctgaagcttatgggcttaaccagccaagtgagtgggctttggtactttgg
aatcagatgtttaaaccagaactacttgagtttgtggctgagtttgtggctgttctacca
ctccagtctgcaatgctaactgatctggcgaagttttatagagccgagttagctgcccga
ggtgaccagtcccagttttcagtttggcttactgggggagtgccaggagactgggctaaa
tacttggggagatcattcagatgcttgctaaggaggactagggatttgaagttgcggcat
agtcttgctcagatggcaactgggttcagtgatgtgattaatacatgcaacaagttattg
gataaggtccctgaaaatgctggacctcttgtgctgaaaagagggcacggtggggcttac
ctgccattgatgtga
DBGET
integrated database retrieval system
