Humulus lupulus (common hop): 133805293
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Entry
133805293 CDS
T11341
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133805293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133805293
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133805293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_17
TPR_14
TPR_16
TPR_8
TPR_19
TPR_12
TPR_9
TPR_7
TPR_CcmH_CycH
ARM_TT21_C
BTAD
TPR_MalT
Sel1
Motif
Other DBs
NCBI-GeneID:
133805293
NCBI-ProteinID:
XP_062099412
LinkDB
All DBs
Position
X:184382953..184392425
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AA seq
1186 aa
AA seq
DB search
MEGEKAAELRILEESVQANPDDFSLHFDLGVFLWENMEEDNKAVKSFKEQAAEHFLASAR
LNPQNGAAFRYLGHYYGGHSLDPQRAIKCYQRALSLNPDDSLSGEPLCDLFDRLGKETLE
AAVCRDASHKSPRAFWAFRRLGYLQVHQRKWSEAVQNLQHAIRGYPASADLWEALGLAYN
RLGRFTAAIKSYGRAIELEPMKVFALVESGNIHLMLGSFKKGIEQFRHALEISPGCISAN
YGLASGLLGWAKECIYLGAFQWGATLLEEASKVARESMRLAGNLSCIWKLHGDIQLTYAK
CYPWMEESQNLELSVSVEAFNVSIISWKHVCCLAATSARRSYQRALLLTPWEANIYTDIA
ISSDIIHTFTKCSGLDINAWQPPEKMALGALLLEPENYEFWVALGCLSNFNPLKQHSLIR
GLQLDVSLAVAWSYLGKIYRGMDEKQLARLAFDCSRSIDPSLALPWAGMSADFHAREPAP
DEAFESCLRAVQTLPLAEFQIGLAKLAVVSGHLSSPQVYGAIRQAVQRAPYCPESHNLKG
LVCEARFEYQSAATSYRLALCALTNLSTGFSKSQIRDISINLARSLFKAGNALDAVEECE
KLKKAGLLDEEGLQIYALSLWKLGESNLALSVAKNLAANVSTMEHNSVAAPISLICRLLY
YISGLDSAINIILKMPKELFQSSKISFIVSAIHALDGSNRLESVVSSSRKFVKSHEDISG
MHFLIALGKLLKNGSGHSIGIQSGVAHLRKVIHMYPNSCLLRNLLGYFLLSGEEWNDTHL
ATRCCNGNASCSPIDGLKTAYEIVGAGAVACYAISSNNPMFSFPTCQNQCLNELGAIPQL
QKCLRQEPWNRTVRYLLILNLLQKAREERFPRNLCTMLVRLISVALSNECYSETEVSYQY
EKFQLLLCASEISLQSGNQNGCIKYAKVASAIAIPNSYLFFAHLLLCRAYASDGDIMNLK
KEYLRCLELETDCDIGWICLKMIEAQYTLQNGSNILELYIKDWVVGEKKSWNAWMALYNL
VQGLIAIQKQDLPSAKEFLEQACTLASAESCLQFCYGATCLELAKEGCDSELLSFAIRSL
TKAKKACVTTIPLPIISALLAQAEGSLGSKEKWEKNLRLEWYTWSPEMRPAELFFQMHLL
AKESKGGPKSSSNVEYCQSPLRWVLRAVHTNPSCMRYWKVLQKLLD
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagaaaaggcggccgagctgcgaatcctagaggagtccgttcaggccaatcct
gatgacttctctcttcattttgatctgggcgtttttctgtgggagaacatggaggaggac
aataaggcagtcaaatcattcaaagaacaagcggcagagcacttcttagcctccgccaga
ctcaacccccaaaacggcgccgcattcagatacttggggcattactatggcggacactcc
cttgatcctcagagagctattaagtgctaccagagggctctctcccttaatcctgacgac
tctctttctggggagcccttatgcgatttattcgaccgcttaggaaaggagaccttagag
gcagccgtctgccgtgatgcttctcacaagtctcccagggccttttgggcctttcggaga
ttgggttacttgcaggttcatcaacgtaaatggtcagaagctgtgcagaatcttcagcat
gccattcgaggttatcctgcttctgctgatctctgggaggctcttggccttgcctacaac
agactaggcaggtttaccgcagctatcaagtcctatgggagagccattgaattggagccg
atgaaagtctttgcattggttgaaagtggaaacattcatttgatgcttggctcctttaag
aagggaattgagcagttccgtcatgctctggagatctcacctggatgcatatctgcaaac
tacgggcttgcttccgggttgcttggttgggccaaggaatgtatttatttgggagcgttt
caatggggagctacattgttagaggaagcatctaaagttgccagagaaagtatgcgctta
gctggaaatttatcgtgtatttggaaactgcacggtgatattcagctcacatatgctaaa
tgttatccctggatggaagagagccagaatttagaacttagcgttagcgttgaagctttt
aatgtctccatcatttcctggaaacatgtttgctgtttggctgcaacttctgctagacgc
tcatatcaacgagctttgctcttgaccccgtgggaagctaatatctatacagatatagca
ataagttcagatattatccacactttcaccaagtgttctggtcttgacataaatgcttgg
cagccaccagagaagatggccttgggggccttgttacttgaacctgaaaattatgagttc
tgggtggctctgggatgtttatctaattttaatccattgaaacaacattctttgattcgg
ggtttgcaattggatgtatctctagctgttgcttggtcctacttaggcaagatctatagg
ggaatggatgagaagcaactggcaaggcttgcttttgattgttccagaagcatagatcct
tcactggcattaccatgggctggcatgtcagctgattttcatgctagggagcctgcacca
gatgaagcttttgagagttgtttacgagctgttcagacacttcctcttgcagaattccaa
atcggtctcgcaaagcttgctgtagtttcagggcatctttcatctccacaggtttatgga
gctatcaggcaggccgtgcagcgcgcaccttactgtcctgagtcccataatttaaaaggg
ctggtttgtgaggcacgatttgagtatcaaagtgctgctacttcctataggctagcactc
tgtgcgctcaccaatctttcaacaggtttttcaaaatctcaaatcagagatatatcaatt
aatttggccagatcactttttaaggcagggaatgctcttgatgctgtagaggaatgtgaa
aagttaaagaaagcaggattgcttgacgaggaaggtctgcaaatatatgctttatcccta
tggaaacttggtgaaagtaatttagccctttctgtggcaaaaaatcttgctgctaatgtt
tctactatggagcataattctgttgctgcccctatcagtttaatctgccggttgctttat
tacatttctggactagactcagctatcaatattattcttaaaatgccaaaggagctgttt
cagagttcaaaaatcagctttatagtgtctgccattcatgctcttgatggaagtaatcga
ctcgagtcagttgtttctagtagtcgtaaatttgttaaatctcatgaagatataagcgga
atgcactttctaatagctcttggtaaactattgaaaaatggatcaggacattctattgga
atacagagtggagtggctcatcttagaaaagttattcacatgtatcctaacagttgtttg
ttaaggaaccttctaggttattttttgctatctggtgaagaatggaatgatactcacctt
gctactaggtgctgtaacgggaatgcttcttgctctccaatcgatggtttgaaaacagca
tatgaaattgttggtgctggagcagttgcttgctatgcaattagcagtaataacccaatg
ttttctttcccaacttgtcaaaatcaatgtctgaatgaactcggagctatcccgcaactg
cagaaatgcttgcgccaagaaccatggaataggactgtgagatatttacttattcttaat
ttactccagaaagcacgcgaagaaagatttcctcgtaatctatgtactatgctcgtacgg
ctaatctctgtggctctttcaaatgaatgttattctgagactgaagtgtcttatcaatat
gaaaaattccaacttctactttgtgcttctgagatcagtttgcaaagtggaaatcaaaat
ggttgtatcaagtatgccaaagttgcttcagcgattgcaattcccaatagttatctcttt
tttgcacatttgcttttatgccgtgcctatgcatcggatggtgatattatgaaccttaaa
aaagagtacttaagatgtttggagttggagacggattgtgatattggttggatttgtcta
aaaatgattgaagcacaatatactttgcaaaatggttcgaatatcttagagctgtacatt
aaagattgggtagtgggagagaagaaatcatggaatgcttggatggctctatataatcta
gtgcaaggtttgattgccatacagaagcaggatcttccttcagcgaaggagtttctcgaa
caagcttgtacattggcaagtgctgaaagctgcctccagttctgttatggtgccacctgt
ttagaacttgccaaggaggggtgtgattcagagttgttatcgtttgcaattaggagtctt
actaaagctaaaaaagcttgtgttactactattcctctacctatcatctcagcattattg
gcacaagctgagggaagccttggctctaaagagaagtgggagaaaaacttgcgcctggaa
tggtatacttggtcaccagagatgaggcctgcagagcttttcttccaaatgcatttgctt
gcaaaagaatcgaaaggtggaccaaaatcttcttccaatgtggagtactgtcagagtcca
ctgagatgggttctcagggctgttcacactaatccttcttgcatgcgatattggaaggtg
ttgcagaagctacttgattaa
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integrated database retrieval system
