Humulus lupulus (common hop): 133830724
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Entry
133830724 CDS
T11341
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133830724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133830724
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133830724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_2nd
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
NBCH_WD40
EIF3I
WD40_CDC20-Fz
Beta-prop_EML
Tricorn_N
WD40_MABP1-WDR62_1st
WD40_RFWD3
DUF4754
PD40
HTH_39
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
133830724
NCBI-ProteinID:
XP_062116759
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Position
4:complement(111999990..112003988)
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AA seq
227 aa
AA seq
DB search
MDSSLENILQDGKLYRQLNSLIVAHLRHYNLNQAASAVASATMTPLNIDVPANRLLELVA
KGLAIEKDEMARGVPSSLLYDSSTLKPAGYVLFHASRTAAVDFSAVPDTQGSSKSFPKHE
TRHLSEHKNVARCARFSPDGKYIATGSSGTSIKLFEVLKIKQMMLPDAKDARDGPVRPVI
RTFYDHAQPIDDLDFHPESNILISASKDHTIKFCVSPSLWGFSFSRN
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggatagcagcttggagaacattcttcaagatgggaagctatacagacagcttaattct
ctcatcgtggctcatcttcgccactacaatcttaatcaggctgcaagtgcggttgcttct
gcaacaatgacacccttgaatattgatgtcccggctaatagacttcttgaactggttgct
aagggtcttgcaattgaaaaagatgagatggcaagaggggttccttcatcactattatat
gattcaagtacattaaaaccggcgggatatgttttatttcatgcttctcgcactgctgct
gttgatttcagtgctgtgccagatacacaaggctcttcaaagagtttcccaaagcatgag
acgaggcatctttcagagcacaaaaatgttgccagatgtgctaggtttagtcctgatggg
aagtatattgcaactggaagttctggtacatcaataaagctttttgaggttttaaaaatc
aagcaaatgatgctgccagatgcaaaagatgcaagagatggtcctgtgcgacctgtaata
agaacattttatgaccatgcacagccaatagatgacctggatttccatccagaaagcaat
attctaatttctgcgtccaaggatcatacaataaagttctgtgtctctccatccctctgg
ggattttcttttagcaggaactga
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