Vreelandella aquamarina SCSIO 43005: CTT34_00870
Help
Entry
CTT34_00870 CDS
T06424
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTT34_00870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmd03021
]
CTT34_00870 (rpoC)
03400 DNA repair and recombination proteins [BR:
hmd03400
]
CTT34_00870 (rpoC)
Enzymes [BR:
hmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTT34_00870 (rpoC)
Transcription machinery [BR:
hmd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTT34_00870 (rpoC)
DNA repair and recombination proteins [BR:
hmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTT34_00870 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QHD48349
UniProt:
A0A857GGF8
LinkDB
All DBs
Position
187907..192121
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGHASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEVDVDEETGERSEHRRLYDTTVGRALLFRILPEGVPFALIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVVDRDGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVVDPSTEEVLIPRNTLLDEKWCASLDTMGVDEIVVRSTITCDTAHGVCSSCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGAVVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LKDAAGEYVSVSGSNTPVQYLLPGNSIISVDDGATIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKESAILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GEAVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNARLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDDL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtccttcggcgaggtgaagaag
cctgagaccatcaactaccgtacctttaagccggaacgggatggtttgttctgcgccaag
attttcggcccggtcaaagactacgagtgcttgtgcggcaaatataagcgcatgaagcac
cgcggtattatctgtgagaagtgtggcgtcgaagtcaccaaagcagccgtgcgccgtgag
cgcatgggccacatcgagctggcatcgccggtcgctcacatttggttcctgaagtctctg
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctctat
ttcgaaagcttcgtggtcatcgaccccggcatgaccacgctggagcgtggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggcgatgacttcgacgcccgcatg
ggtgccgaagcggtccaagagctgctgaaagacatcgatctggaagaagagatcaaccat
ctgcgtgaagaaattccgcagacgaactctgaaaccaagatcaagaagctgtctaagcgc
ctgaagctgctggaagcgttctaccactccggcaatgcgccggcgtggatggtcatggaa
gtgctgcccgtgctaccgccggatctgcgtccgctggtaccgctggacggtggccgcttc
gcgacatcggatctcaacgacctttaccgtcgtgtgattaaccgtaacaaccgcctgaag
cgtctgctggacctcaacgcgccggacatcatcgtgcgcaacgagaagcgtatgctccag
gaagcggtcgacgcgctgctggacaacggccgccgtggccgtgcgattaccggttccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaagcagggtcgcttccgtcag
aacttgctcggtaagcgcgtggactactctggccgttcggtcatcaccgtcggtccgacc
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcgctcgagctgttcaagccgttc
atctactccaagctgcagtcgctgggccatgcgtccacgatcaaagcggcgaagaagatg
gtcgagcgcgagctgccggaagtgtgggacatcctggccgacgttattcgcgaacacccg
gtactgctcaaccgtgcgccaacgctgcaccgtctgggtatccaggcgttcgaaccgctg
ctgatcgaaggtaaggctatccaactgcacccgctcgtctgtgcggcctacaacgccgac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcacagctcgaagca
cgtgcgctgatgatggcgaccaacaacgtgctgtcgcctgctaacggcgagccgatcatc
gtcccgtcgcaggacgttgttctgggtctgtactacatgacccgtgagaagatcaacgcc
aaaggcgaaggcatggtgttctctgacctcaacgaggtggagcgtgcgttcggcactcag
tccgtgtcgctgcatgcccgcgtcaaggtgcgtctggatgaagtggatgtcgacgaagag
accggtgagcgttccgagcatcgtcgcctttacgacaccaccgtgggtcgtgcgctgcta
ttccgcattctgccggaaggcgtgccgttcgcgctgatcgatcagccgatgaagaagaag
gcgatctccagcctgatcaacgaggtataccgtcgtgcgggcctgaagcccacggtcatc
ttcgcagaccagctgatgtacaccggcttccgtctggcgacctggtccggtgcctcgatc
ggtgtgaacgacttcgttatccccgaagccaaaaccgaaatcgtcgacgcggcagaagca
gaagttaaagagatcgaagatcagttctcttccggtctggtaacggcaggcgagaagtac
aacaaggtcatcgatatctggtccaaggccaacgataaagtggccaaggcgatgatggtt
ggcatctcgaaagagacggtcgtcgatcgtgacggtaatgaagtcgagcaagactccttc
aacagcgtcttcatcatggccgactccggtgcccgtggtagtgccgcccagatccgccag
ctggcgggtatgcgtggcctgatggccaagccggatggctcgatcatcgaaacgccgatc
gtggccaacttccgtgaaggtctgaacgtactgcagtacttcatctcgacccacggtgca
cgtaaaggtctggcggatacggctctgaaaacggctaactccggttacctgacccgtcgt
ctggtcgacgtggcgcaggatctggtcattaccgagactgactgtggcaccgaaaacggc
ctgacgctgcacccgatcatcgagggtggcgacatcatcgtaccgctgtctcagcgcgta
ctgggccgtgtcgtcgcgcaggacgtggtcgatccgagcacggaagaagtgctgattccg
cgcaacacgctgctggacgagaagtggtgtgcgtcgctggacaccatgggcgtggacgag
atcgtcgtacgctccacgattacctgtgacaccgcgcacggcgtgtgttcgtcctgttac
ggtcgtgaccttgcccgtggccaccaggtcaacatcggtgagtctgtcggtgttatcgcc
gcccagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgttcttctgcggtggatagcgttcaggtcaagcacggcggtaaagtgcgc
ctgcacaacatcaagcacgttgagcgtgccgacggcaaactggtcgtggtgtctcgttcg
agcgccctggcggtcgccgacgatcacggtcgtgagcgtgagtactataagctgccctac
ggtgctgagctctccgtacgcgacggtgacgtggtcgatgccggtgcggtcgtggccaag
tgggatccgcacacgcacccgatcattgccgaggtagaaggtaaggcgcagttcatcgat
ctcgacgagggtgtcaccatgcaccgcagcgtcgatgagatgaccggtctatcgtctatc
gaagtcatcgaatcggccgcacgcccgatggcaggtcgtgacaagcgtccgatggtgatg
ctgaaagacgctgctggcgagtacgtttctgtatccggctccaacacgccggttcagtac
ctgctgccgggcaactcgattatctccgtagatgatggcgcgaccatcggcgtcggtgaa
gtcgttgctcgtattccggtcgaggcgtctggtaacaaggacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgtaaaccgaaagagtctgccattctggcggaaatc
agcggtgtggtgagcttcggcaaagagaccaaaggtaagcgtcgtctgacgattaccccg
gaatctggcgatccgttcgaagcgctgatcccgaaatggcgtcaaatcgccgtgttcgaa
ggtgaagcggtcgagaagggtgaagtgatctccgatggccccagtaacccgcacgatatc
ctgcgtctgctgggtgttgcggaactggccaagtacatcacggctgaagtccaggacgtt
tatcgtctgcagggtgttggcatcaacgacaagcatatcgaagtgatcgtgcgtcagatg
ctgcgtaaggtagagatcaccgactccggcgactctgacttcatcaccggcgaccaggcc
gagctcgtgcgcgtcctcgaacagaacgcacgactcgagaaagaaggtaagttcccggcc
aagtatcaacgcttgctgctgggtatcactaaggccagcttggccactgaatcgttcatc
tccgccgcgtcgttccaggaaacgacccgcgtactgaccgaagcagcggtcaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtggttggacgtctgattccggcaggt
accggtctgacccaccacgcagagcgtcgtcgcaagcgcgaagacgtagagcgtctgttc
aacccctcggcgaccgaggtagagcaggagcttggtgctcagttgaccgccctggattca
gacgacgatctgtaa
DBGET
integrated database retrieval system
