Halomonas meridiana: CTT34_02730
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Entry
CTT34_02730 CDS
T06424
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hmd
Halomonas meridiana
Pathway
hmd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CTT34_02730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmd03400
]
CTT34_02730
Enzymes [BR:
hmd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CTT34_02730
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CTT34_02730
DNA repair and recombination proteins [BR:
hmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CTT34_02730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QHD48674
UniProt:
A0A857GJC7
LinkDB
All DBs
Position
537510..538337
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETTRRGIAPYLEGQEITEVRVRQPRLRVPVPDDLADRLIGARVGELARRAKYL
QMPLAMPDGHATLLWHLGMSGSLRIARLGDVPKKHDHVDLVTASGYVLRYHDPRRFGFVD
WQQGDGSGDTRLAHLGPEPLSEAFDGQWLYRLSRDKRVAVKPFLMDNRVVVGAGNIYAAE
ALFMAGIDPRRAAGRISRARYDALAAAVKEVLAAAITQGGTTLRDFVSGQGEPGYFAQRL
NVYGRHGQPCLRCGSELRRITLGQRASVFCPGCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcctgaagtagaaaccacacgacgtggcattgccccctatctcgaaggg
caagagattaccgaagtgcgagtgcgccagccgcgcttgcgcgtgccggtgcctgacgat
ctggccgatcgcctgatcggcgcgcgcgtcggcgagctggcgcgccgcgccaagtatttg
cagatgccgctagccatgcccgatggccatgccacgctgctgtggcacttgggcatgtcg
ggaagcctgcgtattgcgcgcctgggcgacgtgcctaaaaaacacgatcatgtggatctt
gtgacggccagcggctatgtgctgcgctaccatgacccgcggcggtttggtttcgtcgac
tggcagcagggcgacggcagtggcgatacccgccttgcgcatcttggccccgagccgctg
agcgaggccttcgatggccagtggctctaccgcctgtcccgtgacaagcgcgtggcggtc
aaaccctttttgatggataaccgcgtggtcgtgggtgcgggcaatatctatgccgccgaa
gcgctgttcatggctggtatcgacccgcgccgtgcggcggggcgtatctcccgggcgcgc
tacgatgcgctggcggccgccgtcaaagaggtcttggcggcagccattacccagggcggc
accacgctgcgcgatttcgtcagcggccaaggagagcccggttatttcgcccagcggctg
aacgtttacggtcgccacgggcagccctgcctgcgctgtggcagcgagcttaggcggatc
actctgggccagcgggccagcgttttttgccccggctgccagcgctaa
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