Hydrocarboniclastica marina: soil367_02765
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Entry
soil367_02765 CDS
T06192
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
soil367_02765 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmi03021
]
soil367_02765 (rpoB)
03400 DNA repair and recombination proteins [BR:
hmi03400
]
soil367_02765 (rpoB)
Enzymes [BR:
hmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
soil367_02765 (rpoB)
Transcription machinery [BR:
hmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
soil367_02765 (rpoB)
DNA repair and recombination proteins [BR:
hmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
soil367_02765 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
RickCE_cat
Motif
Other DBs
NCBI-ProteinID:
QCF27785
UniProt:
A0A4P7XLH6
LinkDB
All DBs
Position
603112..607185
Genome browser
AA seq
1357 aa
AA seq
DB search
MTYSYTEKKRIRKDFGKLPSVMDVPYLLAIQLDSYRDFLQLEASAESRQETGLHAAFKSV
FPIASYSGNAALEYVSYRLGEPAFDVKECQLRGVTYAAPLRVKVRLIIYDKESSNKAIKD
IKEQEVYMGEMPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASILLRALGFTSEQMLEMFFDTSKFKLGAET
AELELVPSRLRGDIATFDIKDAGGEIIVEEGRRVTARHIRQLEKAGITTLDVPKEYLYGR
VTAKDIVDTKTGELLVECNTELTEEVYDKIVEAGVTDLETLYTNDLDCGPFMSDTLRIDP
TRNPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRLGREETE
GRSVLENGDIIDVLRTLINIRNGKGNVDDIDNLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSLAESEGLMPQDLINAKPVGAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNNYGFLESPYRKVV
DGVVTDDIQYLSAIEESNYIIAQASAAVDENGKLTDELVTVRHQNEFTVTPPEKVNFKDV
SPRQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERIVAQDSGVC
VIARRGGEIESVDASRIVVRVSADETEAGDAGVDIYNLTKYTRSNQNTCINQKSIVKRGD
VIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRLTTIHIQE
LTCVARDTKLGSEEVTADIPNVGESALSKLDESGIVYIGAEVGPGDIMVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGTRGTVIDVQVFTRDGIEKDQRALSIEKEQLDE
YRKDLKDEYRIVEGATFERLRNALRDQAVISAPGMKKGDKLTDDSFAGLGRDDWFKIRMS
DDALNELIEKSEEGLIARRKEHEERFEDKKRKIQQGDDLAPGVLKIVKVYLAVKRRIQSG
DKMAGRHGNKGVISAIMPVEDMPYDESGEPVDIVLNPLGVPSRMNVGQVLETHLGAAAKG
LGRKINGMLEAQKKVSEIRSLLNEIYNGTETPHVDLDSLNDQEILALADNLREGVPMATA
VFDGAKEHEIKQMLALADMDTSGQTTLYDGRTGDKFDRPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcctacaccgaaaaaaaacgtatccggaaagacttcggcaagctgccgtct
gtcatggatgtcccttatttgctggccatccagctggattcctatcgggacttcctgcag
ttggaggcctccgctgaaagccggcaggagaccggtttgcatgcggcattcaaatccgta
tttccgattgcgagttactccggcaatgctgcgctcgagtacgtgagctatcgcctgggc
gagccggcctttgacgtcaaagagtgtcagttgcgcggtgtcacgtacgcggcgcctctg
cgcgtgaaggttcgtttgatcatttatgacaaggaatcgtcaaacaaagcgatcaaagat
atcaaggagcaggaagtctacatgggcgaaatgcccctgatgactgaaaacggtaccttc
gtcgtaaacggtaccgagcgcgttattgtttcccagctgcatcgttcgcctggcgtcttt
ttcgatcacgataagggcaagacgcactcgtccggcaaactgctgtactccgcccgaatc
atcccctatcggggctcgtggcttgacttcgagtttgaccccaaggattgcgtattcgtc
cggattgaccgccgtcggaagcttcccgccagtattcttctgcgggctctcggctttacg
tctgagcagatgctggaaatgttcttcgacaccagtaagttcaagctgggagcggagact
gccgagttggaactggtgccaagccgtctgcgtggtgacatcgcgacgttcgacatcaaa
gatgccggcggtgagattatcgtcgaggaaggccgtcgcgttactgcacgccacattcgt
cagcttgagaaggccggcattaccacgcttgacgttcccaaggaatatctctatggccgc
gttacagcgaaggacatcgtcgacaccaagacgggcgaactacttgttgagtgcaatacg
gagctgacagaagaagtctacgacaagatcgtggaggccggcgttaccgatctggaaacg
ctctacaccaatgatctcgactgtgggccgtttatgtcagataccctgcgtatcgacccc
actcgcaatccccttgaagcgctggtagagatctaccggatgatgcgccctggcgaaccg
ccaaccaaggagtctgctgagaacctgttcaacaacctgtttttctcagaagagcggtat
gacctctctgcagtgggacggatgaagctcaatcgccgtctgggtcgtgaagagaccgaa
ggccgtagcgttctcgaaaacggcgacatcattgatgtgctccgtaccctgatcaacatt
cgcaacggcaaaggtaatgttgacgatatcgataacctcggtaaccgtcgtatccgctcc
gttggcgaaatggctgagaaccagttccgtgtgggtctggtacgggtagagcgcgcggtt
cgcgagcgcctgagcctggccgaaagtgaaggcctcatgccgcaggatctcattaacgcc
aagcccgtaggcgcggcggtaaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaataacccgctgtctgaggttactcacaagcgtcgtgtatcagctttgggcccg
ggcggtctgacccgtgagcgggctggctttgaagtgcgagatgttcatccaacccattac
ggtcgtgtctgtccgatcgaaacgccggaagggccgaacatcggcctgatcaattctctg
gcgacctatgcacgcaccaataactacggtttccttgagagcccgtatcgaaaggtggtt
gatggcgtagttaccgatgacattcagtatttgtctgccattgaagaaagcaactacatc
attgctcaggcaagtgcggcggtcgacgagaatggcaagcttaccgatgagctggtaacc
gttcgccatcagaacgaattcacggtcacaccacccgagaaggtcaacttcaaggacgtt
tcaccgcgtcaggttgtgtcggtcgctgcggccatgattccattcctggaacatgatgac
gccaaccgtgccttgatgggctcgaacatgcagcgtcaggccgtgcccacactgcgtgct
gaaaagccactggttggtactggtatggagcggatcgtcgcccaggactccggtgtatgt
gtgatcgcgcgtcgtggcggtgaaattgaaagcgtcgatgcgtcacgcatcgtggtgcgc
gtcagtgcagatgaaactgaagccggtgacgccggtgtcgatatctacaacctgaccaaa
tacacacgctctaaccagaacacctgtatcaaccagaagtcgatcgtgaagcgtggcgat
gtcattgctcggggtgacgttctggccgacggcccgtctgtcgatctgggcgaactggcc
ctgggccagaatatgcgcatagcgttcatgccctggaatggttacaacttcgaggattcc
atcctgatctcggagcgggttgtgcaggaggatcggctgactaccatccacatccaggaa
ctgacctgtgtggcgcgggacaccaagctgggttcagaagaggtcactgctgacattccg
aacgtcggcgagagtgctctgtccaagcttgatgagtccgggattgtctatatcggggca
gaggtagggcctggtgacatcatggtcggcaaggtgacaccgaagggtgaaacccagctg
acaccggaagaaaaactcctgagggcgatcttcggtgagaaggcgtccgacgtgaaggat
acgtcgttgcgggttcccagtggtacccggggtaccgtgatagacgttcaggtgtttacc
cgcgacggtatcgagaaagatcagcgcgcgctttcgatcgagaaagagcagcttgatgag
tatcgtaaggacctgaaggacgagtaccgaattgtcgaaggggccactttcgagcggctg
cgtaatgcgctccgggaccaggctgtcattagcgcgcccggcatgaagaagggcgacaag
cttacggatgactctttcgccggtcttggccgtgacgactggttcaagatccgtatgagc
gatgatgccctcaacgagcttatcgaaaagtctgaagaggggcttattgctcgtcgtaaa
gagcatgaagagcggttcgaggacaagaaacgcaagatccagcagggtgacgatctggcg
ccaggggtcctgaaaatcgttaaggtctaccttgcagtcaagcgccgcatccagtctggt
gacaagatggccggccggcacggtaacaagggtgtcatttcggcgatcatgcctgttgaa
gatatgccgtatgacgagtctggcgagcctgtggatatcgttctgaatcccctgggtgtg
ccctcgcggatgaacgtcgggcaggtactggagacgcaccttggtgctgcagcgaaaggg
ctgggtcggaagatcaacggcatgctggaagcccagaagaaggtgagcgagatccgtagt
ctgctcaacgagatctataacgggacggaaaccccgcatgtggatctggacagtctgaat
gatcaggagatcctggctctagccgataatctgcgcgaaggtgtccccatggcaaccgcc
gtattcgacggtgccaaggaacacgagatcaaacagatgctggcgttggcggacatggac
actagcgggcagacaaccctctatgatggtcgcaccggcgataaattcgaccggccggtc
acggttggctacatgtatatgctcaagctcaaccacctcgtggatgacaagatgcacgct
cgttcgaccggctcctacagcttggtcactcagcaaccgctgggtggtaaggcgcagttc
gggggtcagcgctttggtgagatggaagtgtgggcgctcgaggcctacggtgcggcgtac
acgctgcaggaaatgcttaccgtcaagtcggacgacgttaacggccgaaccaagatgtac
aaaaacattgtcgatggcgaccaccgtatggaaccgggtatgccggagtcctttaacgtg
ctggtcaaagaaatccgttccctgggcatcgacatcgagctcgaaacggaataa
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