Hyphomicrobium nitrativorans: W911_15530
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Entry
W911_15530 CDS
T02943
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
W911_15530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_15530
Enzymes [BR:
hni01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
W911_15530
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
W911_15530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AHB49490
UniProt:
V5SHF3
LinkDB
All DBs
Position
3230392..3231078
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AA seq
228 aa
AA seq
DB search
MANTLISSVPDCPPEAPRDCPRCTRLVAFRDASAAANPGWFNGAVPSFGADAARLLIVGL
APGLKGANRTGRPFTGDYAGDLLYSTLLAFGFARGTYRADPKDGLQLVDCMITNAVRCVP
PGNKPLPQEITSCRAYFSSRLAHLPRLRAMVALGRVAHDQTLATLGVRKALYPFKHGARH
EIGQVVLFDSLHCSRLNTNTGRLTTAMFHDVFRDVRAFLDQDHGTPRR
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacacactcatctcatccgttccggactgtccgcccgaggcaccgagggattgt
ccgcggtgtacgcggcttgtcgcatttcgtgacgcttcggccgcggccaatcccggctgg
ttcaacggcgcggttccctcgttcggcgcagacgccgcgcgccttctcattgtcggcctc
gcgccgggcctcaagggcgccaaccgcacggggcgtccgttcaccggagactacgcgggc
gacctcctttactcgacgctcctcgctttcggcttcgcgcgcggcacctatcgcgccgat
cctaaggacgggttgcaactcgtcgactgcatgattaccaacgccgtgcgttgcgtgccg
cccggcaacaagccgctgccccaagagatcacgagctgccgcgcctatttctcctcgcgg
ctcgcacacttgccgcgccttcgcgcgatggtcgcgctcgggcgcgtcgcccacgatcaa
acgctggcgactctcggggtccggaaggcgctttatccgttcaagcacggcgctcgccac
gagatcggtcaggtcgtgcttttcgatagccttcattgctcacgcctcaacaccaacacg
ggccgtctcaccacggcgatgttccacgacgtgtttcgcgacgtgcgggcgtttcttgat
caggatcacggcacacctcgccgctga
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