Hymenobacter nivis: DDQ68_12875
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Entry
DDQ68_12875 CDS
T05498
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hnv
Hymenobacter nivis
Pathway
hnv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DDQ68_12875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hnv03021
]
DDQ68_12875 (rpoB)
03400 DNA repair and recombination proteins [BR:
hnv03400
]
DDQ68_12875 (rpoB)
Enzymes [BR:
hnv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DDQ68_12875 (rpoB)
Transcription machinery [BR:
hnv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DDQ68_12875 (rpoB)
DNA repair and recombination proteins [BR:
hnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DDQ68_12875 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
YtxH
Motif
Other DBs
NCBI-ProteinID:
AWM33599
UniProt:
A0A2Z3GHW4
LinkDB
All DBs
Position
complement(2884505..2888407)
Genome browser
AA seq
1300 aa
AA seq
DB search
MATPKAKTAALQKSAAAERISFAKIRKVIEYPDFLDVQVQSFQDFFQLETAAENRSNEGL
FKVFAENFPISDSRENFVLNFIDYHVDPPKYSVDECIDRGLTYSVPLKAKLRLICNDKDN
EDFETIEQEVFLGNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSAR
IIPFKGSWIEFATDVNNVMYAYIDRKKKFPVTTLLRAIGYGTDKDILDLFGLSEEVKADK
KNLKKAVGRKLAARVLRTWTEDFVDEDTGEVVSIDRNEVLLERDSMIEEADIDTILEAGA
KSVILHRENVNIADFAIIYNTLQKDNSNSEKEAVEQIYRQLRNTEAPDEETARDIIQKLF
FSDKRYDLGEVGRYRINKKLAIDMSQASRVLTNQDIVLIVKYLIGLINSKAIVDDIDHLS
NRRVRTVGEQLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTN
QLSQFMDQTNPLAEVTHKRRVSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNI
GLISSLCVHARVNSMGFIETPYRDVKNGKVDMSSNVKFLTAEEEDTHHIAQANSLLDNDG
KLTQELVKGRFEGDFPVVNPEEYSYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQR
QAVPLVRPEAPIVGTGLEGRIATDSRTLVVSEGEGVIDYVDANKIIVKYDLSEDDVMISF
DAERITYDLIKFRRTNQDTCLNLTPLVKRGERVSKGQPLCEGYGTNQGELALGRNMQVAF
MPWQGYNFEDAIVISERVVRDDIFTSIHIEEFELEVRETKRGEEELTSEIPNVSEEAVRN
LDDNGIIRLGAEVREGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKAPPSL
QGVVIGTKLFSRPKKDKNLRAKSKKEVEDLKDKYAHELRGIKAIMVDKLVQLLEGKTSQG
IKHRFGEEMIAKGVKFNRKNINEGLFPEKNPYKDESNYAVPEEVNLFKDLILEGWTADAR
VNAMLLTLVKNYAKRRNTITAHFKRHRFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKM
AGRHGNKGVVARIVRDEDMPFLADGTPMDIVLNPLGVPSRMNIGQIYETVLGWAGLKMGR
RYSTPIFDGATEAEVSKELAEAGLPHFGRTYLHDGLTGQQFDQPVTVGVIYMLKLGHLVD
DKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNVLQEILTVKSDDVVG
RAKAYEAIVKGDVLPKPNIPESFNVLIHELRGLALEITLE
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
ttggctacaccgaaagcaaaaacggccgcgctccagaaatcggccgccgctgagcgaatc
agtttcgctaagattagaaaggttattgaatatccggacttcctggacgtgcaggtgcag
tcgttccaggatttctttcagttggaaaccgccgctgagaatcggtcaaatgagggtttg
ttcaaggtatttgccgagaacttccccatctctgattcgcgcgaaaatttcgtcctgaat
tttatagattatcacgttgacccacccaagtactcggttgacgagtgcattgaccggggc
ctaacgtactcggtgccgcttaaagctaaactgcgccttatctgtaacgataaggacaac
gaggattttgaaacgattgagcaggaagtgtttctgggtaatatcccgtacatgaccgaa
aaaggctcgtttgttattaatggcgctgagcgggttatcgtatcgcagttgcaccgttcg
ccgggtgtattctttgcccagagcaagcacaccaacggtaccaagctgtattcggcgcgc
atcattccattcaaagggtcgtggatcgagtttgccacggacgttaataacgtgatgtat
gcttacatcgaccgcaagaagaagtttccggttacaacacttctccgtgccattggctat
ggtaccgacaaagatatcctcgacttattcgggctgtcggaggaagtaaaagcagataag
aagaacttaaaaaaggctgttggacgcaagctggctgcccgggtgctacgcacctggacg
gaagacttcgtggacgaggacactggggaggtggtttccatcgaccggaacgaggtgctt
ttggagcgtgactcgatgatcgaggaagctgacatcgacaccatcttagaggctggggcg
aaatcggttatcctgcaccgcgagaatgtgaacattgcggacttcgctatcatatacaac
acgcttcagaaggacaactctaactcggagaaagaggccgtagagcagatttatcgccag
ctccgtaatacggaggcccctgacgaagaaactgcccgcgacattatccagaagctgttc
ttctcggacaagcgctatgaccttggggaagtaggccgctaccgtatcaacaagaagcta
gccattgacatgagccaggcttcacgggtattgaccaaccaggacattgtgctgattgtg
aaatatctcattggtttgatcaactcgaaggccattgttgatgacattgaccacttgagc
aaccgccgtgtacgcacggtgggcgagcagctttacgcgcaatttggcgtgggcttggct
cgtatggcccgtaccattaaggagcgtatgaatgtgcgcgataacgaggatttcaaaccg
gttgacttgatcaacgcccggacgctgtccagcgtgatcaactcgttcttcggcacgaac
cagctgtcgcagtttatggaccaaaccaacccactggctgaagtgacgcacaagcgtcgc
gtatcggctcttgggccgggaggtctgtcgcgtgagcgtgctggttttgaagtacgtgat
gtgcactatacacactatggtcgtctgtgcaccatagaaactccggagggccccaacatc
ggtctgatttcgtcgctgtgcgttcacgcccgcgtgaactcgatgggcttcattgaaacc
ccttaccgggacgtaaaaaacggtaaggtggacatgagttccaatgtgaagttcttgacc
gctgaggaagaggacacgcatcacattgcgcaggccaactccttgcttgataatgatggt
aaacttacccaggagctggtgaagggccgttttgaaggtgacttcccggtggtaaacccc
gaagagtactcttacatggacgtggctccaaaccagattgtatcggtagctgcctcgctg
attcctttcctagagcacgacgatgctaaccgggccctaatgggctcgaacatgcagcgc
caggctgtaccgttggtgcgccccgaggcccccatcgtgggtactggtttggaaggccgc
attgctaccgactcgcgtacgctggttgtatcggaaggtgaaggcgtaatcgattacgtg
gacgccaacaagattatcgtgaagtatgatttgtcggaagacgatgtgatgataagcttt
gatgccgagcgtatcacttatgacctcatcaaattccgccgtaccaaccaggatacttgc
ctcaacttaacgccgctggtaaaacgcggcgagcgggtgagcaaaggccagccgttgtgc
gaaggttacggtaccaaccagggcgaactagccctgggtcgcaatatgcaggtggccttt
atgccatggcagggctataacttcgaggatgccatcgtcatctcggagcgcgtagttcgg
gatgacattttcacctcaattcacattgaagaatttgagttggaagtgcgtgaaaccaag
cgcggcgaagaagaactgacttcggaaattcctaatgtgagcgaagaagcagttcgtaac
ctcgacgataacggcatcatccgtttgggtgctgaagtgcgggaaggtgacattctgatt
ggtaaaatcacgcctaaaggcgagacggacccaaccccggaagagaagttgctccgcgct
atctttggcgacaaggctggtgatgttaaagatgcttcgcttaaagcgccgccctctttg
cagggcgtggtgattggtaccaagctgttttcgcgtcctaagaaagacaaaaacctgcgg
gctaagtcgaagaaggaagtggaagacctgaaagataagtacgcgcacgagctgcgtggt
atcaaagccatcatggtggataagctggtgcagctgctcgaaggcaaaacgtcgcaaggc
atcaagcaccgctttggcgaggagatgattgccaagggcgttaagttcaatcgcaaaaac
atcaacgagggcctcttccccgagaagaacccctataaggacgaaagcaactacgccgta
ccggaagaggtaaacctgtttaaggacctgatcctggaaggttggacggctgacgctcgc
gtgaatgcaatgctgctgacgctggtgaaaaactacgccaaacgccgcaacaccatcacg
gcgcacttcaaacgccaccgcttcacgctggaagtgggtgacgaactgcccgcaggcatt
gtgcagcttgctaaggtttacatagccaagaagcgcaagctgaaggtgggtgacaagatg
gccggccgccatggtaacaaaggggttgtggcccgcatcgtgcgcgatgaggatatgcct
ttcttggccgatggcacgccgatggacattgtgctgaatccgttgggcgtaccaagccgg
atgaacatcgggcagatctacgagaccgtgctgggctgggccggtctgaaaatgggccgt
cgttactcgacgccaattttcgacggcgctacggaagcagaagtatcgaaagaattggcg
gaagctggtttgccgcacttcggccgtacctacctgcacgacggcttgaccgggcagcag
tttgaccagcccgtgaccgtgggtgtgatttacatgcttaagcttggccacttggttgac
gacaagatgcacgcccgttccattgggccgtactcgcttatcacgcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgcttcggcgaaatggaagtttgggccctggaggcc
ttcggtgcctccaacgtgcttcaagaaatcctaactgtaaaatcggacgatgtggtgggt
cgtgccaaagcttacgaagccatcgtaaaaggcgacgtgttgcccaagccgaatatcccc
gagtcattcaacgtgcttatccacgaactgcgtggcctggcactggaaatcacgctggag
taa
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integrated database retrieval system
