Hoeflea alexandrii: ABWH89_16660
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Entry
ABWH89_16660 CDS
T11168
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hoax Hoeflea alexandrii
Pathway
hoax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hoax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABWH89_16660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hoax03021
]
ABWH89_16660 (rpoC)
03400 DNA repair and recombination proteins [BR:
hoax03400
]
ABWH89_16660 (rpoC)
Enzymes [BR:
hoax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABWH89_16660 (rpoC)
Transcription machinery [BR:
hoax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABWH89_16660 (rpoC)
DNA repair and recombination proteins [BR:
hoax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABWH89_16660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
XHC36557
LinkDB
All DBs
Position
complement(3489964..3494172)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNHEVMNLFNNNVPAQTFDSIRISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLMDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEDYMVAVDEFGEDSFTA
MIGAEAIYEMLASMDLERIAGELRTELASTTSELKSKKLMKRLKIVESFLDSGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIQAENEPGQGMVFSDMGELHHALE
SKVVTLHTKIKGRFKSVDADGNPTSKIYETTPGRMIIGELLPRNVNVSFDICNQEMTKKN
ISRMIDTVYRHCGQKDTVIFCDRIMQLGFGHACRAGISFGKDDMVIPDTKAKIVGDTDAL
VKEYEQQYNEGLITQGEKYNKVVDAWGKATEKVADEMMARIKSVEFHDNGRQKQMNSIYM
MSHSGARGSPSQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHVDCGTTEGLTMTAIVDAGQVVASIGQRILGRTT
LDDINHPVTGDLIVKAGSMIDEAQVVDIEAAGIQSVRIRSPLTCEIQTGICGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVRIKNRNM
LRNSDGNLIAMGRSMAIQILDEAGTERSSQRVAYGSKIYVDDGDAVKRGQRLAEWDPYTR
PMMTEVEGTVEFEDVVDGISVLEATDEATGITKRQVIDWRSTPRGTDLKPAIVIKGKDGE
IAKLGRGGEARFQLSVDAILSVEPGAKVSQGDVLARVPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRIQIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TESGDSVYIVGDNVDQIELDNANDRLVEEGRKPAYGVPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKVDTLQGLKENVIVGRLVPAGTGGTMTQIRRIATSRDDLILDERRKT
SGAETAAPMLTDMAKEEPSPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatgaggtcatgaatcttttcaacaacaatgttccggcgcagacgttcgattcc
atccggatatcgatcgccagccccgagaagattctttcctggtctttcggcgaaatcaaa
aagccggagacaatcaactatcggacattcaagcctgagcgcgacggtctgttctgcgcc
cgcatctttggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgcggcgtagaagtcacgctttcgcgcgtgcgccgc
gagcgcatgggccatatcgagctcgcagctccggttgcccacatctggttcctcaagtcg
ctgccttcgcgcatcggcacgctgatggacatgacgctcaaggatatcgagcgggtcctg
tacttcgagaactacatcgtcaccgagccgggcctgacgtcactcaaggagaaccagctt
ctctccgaggaagactacatggtcgccgtcgacgagttcggcgaagacagcttcaccgcg
atgatcggagccgaggccatctacgagatgctcgcctcgatggacctcgagcgcatcgcc
ggtgaactgcgcaccgaactggcctccacgacttccgaactgaagtccaagaagctgatg
aagcgcctcaagatcgtcgaaagcttcctcgattccggcaaccgcccggaatggatgatc
atgaaggtcgtgccggtgatcccgccggacctgcgtccgctggtcccgctcgatggcggc
cgtttcgccacatccgacctcaacgacctctaccgtcgcgtgatcaaccgcaacaaccgt
ctcaagcggctgatcgaactgcgtgcgcccggcatcatcatccgcaacgagaagcggatg
ctgcaggaagctgttgacgcgctgttcgacaacggccgccgcggccggaccatcactggc
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgtttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccgga
ccggaactcaagctgcaccagtgcggcctgccgaagaaaatggcgctcgagctgttcaag
ccgttcatctatgcccgtcttgacgccaaggggtattcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtgatccgcgag
catccggttctcttgaaccgcgcgccgacgctccaccgtctgggcatccaggcgttcgag
cctaccctggtggaaggcaaggcgatccagcttcatccgctcgtctgtactgcgttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctt
gaagcacgcgtgctgatgatgtcgactaacaacatcctgcaccccgccaacggcgcaccg
atcatcgtgccgtcgcaggacatggtgctgggtctgtactatctttcgatccaggctgag
aacgagccggggcagggcatggtgttctccgacatgggtgaactgcaccacgctctcgaa
agcaaggtcgtcaccctgcacaccaagatcaagggacgcttcaagagcgttgacgcagac
ggcaatccgacatcgaagatctacgagaccacgcctggtcgcatgatcatcggcgaactc
ctgccgcgcaacgtcaatgtctcctttgacatctgcaaccaggaaatgaccaagaagaac
atttcccggatgatcgacaccgtctaccgccactgcggtcagaaggacacggtcattttc
tgtgaccgcatcatgcagctcggcttcggccatgcctgccgcgccggcatttccttcggc
aaggacgacatggtgatcccggacaccaaggcgaagatcgttggcgacaccgatgcgcta
gtcaaggaatacgagcagcagtacaacgagggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggccaccgagaaggttgccgatgagatgatggcgcgc
atcaagtccgtggaattccacgacaacggccgccagaagcagatgaactcgatctatatg
atgagccactccggtgcgcgtggttcgccgagccagatgcgtcagctgggcggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagaccccgatcatctcgaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacccacggcgcacgtaagggcctcgcc
gacaccgctctgaagacggcgaactcgggttacctcacccgtcgtctggtcgacgttgca
caggattgcatcgtcacccatgtcgactgcggcaccaccgaaggcctgaccatgacggcg
atcgtcgatgccggtcaggtggtggcgtccattggtcagcgtatccttggccgcaccacg
cttgacgacatcaatcatccggtcaccggcgatctcatcgtcaaggccggctcgatgatc
gatgaagcccaggtagtcgatatcgaggccgcaggcatccagtcggttcgcatccgctcg
ccgctgacctgcgaaatccagaccgggatctgcggaacctgctacggccgtgaccttgcg
cgcggcacgccggtcaacatcggtgaggccgtcggcgtcatcgcagcgcagtcgatcggt
gagccgggcacccagctgaccatgcgtaccttccaccttggcggcaccgccaccgtggtc
gaccagtcgttcctggaagcctcctacgagggtacggtccgcatcaagaaccgcaacatg
ctgcgcaactccgatggcaatctgattgccatgggccgttcgatggcgatccagatcctg
gatgaagccggcaccgagcgttcctcgcagcgcgtcgcctacggttccaagatctatgtg
gatgacggcgatgcggtcaaacgcggccagcgtctggccgagtgggacccgtatacccgc
ccgatgatgaccgaagtcgaaggcaccgtcgaattcgaagatgtcgtcgacggcatctcg
gttctcgaggccaccgacgaggcaaccggcatcaccaagcgtcaggtcatcgactggcgt
tcgacgccgcgtggcaccgatctcaagcctgcgatcgtgatcaagggcaaggatggcgag
atcgccaagctgggccgtggcggtgaagcccgcttccagctttccgttgacgcgatcctg
tcggtcgaacccggtgctaaggtcagccagggcgatgttctcgcccgtgtgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgggttgcggaactgttcgaggcc
cgtcgtccgaaggatcacgccatcatcgccgagattgatggtaccatccgctttggtcgc
gactacaagaacaagcgccggatccagatcgagcctgcggaagatggcgtcgagcccgtc
gagtatctcatcccgaagggcaagccgttccatcttcaggatggcgactacatcgagaag
ggcgactacatcctcgacggcaatcccgcgccgcacgacatcctggcgatcaagggtgtg
gaggctctggcttcctacctcgtcaacgagatccaggaagtttaccggttgcagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgaatccggcgattccgtctatatcgtcggcgacaatgtcgatcagatcgagctggac
aatgccaatgaccgtctcgtcgaggaaggccgcaagcctgcttacggcgtgccggtgctg
ctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggcggcatcgttccag
gagaccaccaaggtgctcaccgaagccgcggttgcgggcaaggtcgacaccctgcagggt
ctcaaggaaaacgtcatcgtcggtcgtctggtgccggccggtaccggcggaaccatgacc
cagatccgtcgcatcgcaacctcgcgcgacgatctgatcctggacgagcgtcgcaagacc
tcgggtgcggaaacggcggctccgatgctgaccgacatggccaaggaagaaccgtcacct
gccgaatag
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integrated database retrieval system
