Hemiscyllium ocellatum (epaulette shark): 132824035
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Entry
132824035 CDS
T09720
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132824035 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132824035 (cnot1)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132824035 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132824035 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
SCRE
Motif
Other DBs
NCBI-GeneID:
132824035
NCBI-ProteinID:
XP_060694271
LinkDB
All DBs
Position
17:complement(69554033..69713254)
Genome browser
AA seq
2379 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEISHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFALQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
TDSGGIAKTMDSSLADFMQEVGYGFCTSVEECRQIILQFGVRDVTASQVARVLGMMARTH
SGLTDGISLQSISAPSSGIWSDGKDKSDSAQAHTWNVEIFIDVVKEVNPNLNFKEVTYEL
DHPGFILRDSKGLQIAVYGIQKGMGIEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDIFCF
ADYPCHTVVTDILKAPPEDDNREIATWKSLDLIETLLRLSELGQYEQVKQLFNFPIKHCP
DMLVLALLQINPTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHA
MAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWL
TDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACLQACAGS
VSQELSETILTMVANCGNVMNKARQPPPGVMPKVRAPSTSSIETMSPVQIDPLSGMASLT
IGGSAASLTPSMQGFTTNLSSAFNTPQSPAKAFPPLSTPNQTTPFSGIGSLPSQLPGSLG
TGSLSGMGTGGLALPTVNTDPFGQRKMSTSGLNPQTFQQSKMKPSDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMYYFGIAALDRFK
NRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQA
QAQAQNKTPLTRQVSAIVTTSTTTTVTKATTVTRPSGVSFKKDVPPSINTTNIETLLVAT
DQAERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSIE
PNFHSLYSNFMDTLKNSDFNKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILHIDLDVKSLLLEAYVKGQQEMLYVVPFVAKVLESSVRSMVFRPPNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGTLLKDKEKLTNLEEQLSAPKRE
SKIPEELPVVVTTAAPVTPATTTTCTSTVPPQPQFSYHDINVYSLAALAPHITVNPNIPL
FQAHPQLKSYVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAH
HMMRNLTAGMAMITCREPLLMSIATNLKNNFATALRTASPQQREMMEQAAAQIAQDNCEL
ACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG
GVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQIYDKCITELEQH
LHAIPPTLAMNPQTQALRSLLEAVVMARNSRDAIAALGLLQKAVEGLLDATSGADPDLLL
RYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVDAVELLIRHHLVNMQQY
DIHLAQSMENGLNYMAVAFAMQLVKFLLVDERSISHVTEADLFNTIETLMRISAHSRGNA
PEGLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL
YHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQQEQQHNPT
ANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQ
SEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELI
SHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPYLRNVELTKPMQILYKGTLRVLLVL
LHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAP
RILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSRTRVSNEPGNRYNIQLINA
LVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYP
NSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKF
WNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggacaacctg
accaagaagaattacaaatccagccagcaggagatctctcatattgtgaaccgacacggg
cccgaggcagacagacacttattacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagcggcaaagatttccatcagactcagtttctgattcaagagtgtgcgtcc
ctgattactaagccaaactttatctcgacgctgtgctacgccattgacaatccgttgcac
tatcagaagagcctgaagccttcaccccatctgtttactcagcttagtaaagtgctcaag
ttaagcaaggtccaagaggtcatctttggccttgcattgctgaattcttctagctcagat
ctgcgggggtttgctctccagttcgtgaaacagaaacttcccgatcttctgcgatcttac
atcgacgcagacgtaagcgggaaccaagaaggtggctttcaggatattgcaatagaggtc
ctacacctgctcctctcccatctgctgtttgggcaaaagggagcttttggtgttggacag
gaacaaattgacgcttttcttaaaactttgcgcagagattttccgcaagagcgttgtcct
gtggtgcttgcaccactgctatatcctgaaaaacgggacattctgatggatagaatcctg
acagattcgggagggatagcgaaaacgatggacagctcactggcagactttatgcaagaa
gtaggctacggcttttgtacaagcgttgaagaatgccgccaaataattttgcagtttggg
gttcgggatgtgactgcatctcaggttgccagggtgctgggaatgatggctcggacgcat
tcaggcctgaccgatggcatttctttacaatctatctcagcccctagtagtggaatctgg
agtgatgggaaggataaaagtgactctgcacaagctcatacctggaatgtagaaatattt
attgatgttgtgaaagaagtgaatccaaacctaaattttaaagaagtgacttatgaactg
gatcacccaggattcatccttcgcgacagcaaaggtctacagatagctgtgtatggcatc
cagaaggggatggggattgaagtctttcctgttgatctcatctataggccttggaagcat
gcagaaggacagctatcatttattcagcattcattaatgaacccagatatcttctgtttt
gctgactacccatgtcatactgtggtgacagacatcttgaaagctcctccagaggatgat
aaccgagaaattgctacatggaaaagcctggaccttattgagaccctactacgtctttca
gagttgggacagtatgagcaggtcaaacagctctttaacttcccaatcaagcactgcccg
gacatgctggtactggccttactgcagattaacccaacctggcacacactgcgccatgag
ctcatttccacactgatgccaattttcctgggcaaccatccaaattctgccattatcttg
cactatgcatggcatggacagggtcaatccccatcaatccgacagctgatcatgcatgca
atggcagagtggtacatgcgtggtgagcagtatgatcaggccaagctctcacgcattctc
gatgtagctcaagacttgaaggccttgtctatgctgctaaatggtactccgtttgccttt
gttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgataaatggtta
actgataaaattcgcgagcatggggaaccatttatccaggcatgtgtgacgttcctaaag
aggcgttgtccttccattatgggtggactggccccagaaaaggaacagcccaagagtgct
caactccctccagaaacactggccaccatgttggcttgcttacaagcctgtgcagggagt
gtttcacaggagctgtcagagaccattctcacaatggtggccaactgtggcaatgtcatg
aacaaggcccgtcagccgccacctggagtaatgcccaaggtccgcgcacctagtaccagc
agtatagaaaccatgtcacctgtacagattgacccattgtctggcatggcttcgttgact
attggtggatcagcagcatcgctcactccaagtatgcagggttttactactaatctgagt
tctgcattcaacacccctcaatcaccagcaaaagcctttccaccactctctacaccaaat
cagacaactcctttcagtggaattggcagtcttccttctcagctcccaggtagtttgggt
acagggagtttgagtggtatgggaactggtggacttgcactaccaactgtgaacactgac
ccctttggacagagaaagatgagcacatctggactgaacccacagacattccagcagagt
aagatgaaaccttctgacctctctcaggtatggccagaggcaaatcagcactttagcaag
gagattgatgatgaagcaaatagctacttccagcgtatctacaaccatccaccccaccct
accatgtctgttgatgaggttttggaaatgctgcaaaggtttaaggattccaacattaaa
cgtgaaagagaagtgtttaactgtatgctacgcaacctctttgaggagtatcgcttcttc
ccccagtacccagataaagagctgcacatcaccgcctgcctgtttggtgggattattgaa
aaggggctggtcacctatatggcattgggacttgcactgcgctatgttcttgaagctttg
cgcaaaccttttgactccaagatgtactactttggtattgctgcactagacagatttaaa
aatagattgaaggattatccgcagtattgtcagcacttggcttctattggccacttctta
cagtttcctcatcatttacaggagtacattgagtatggccagcaatccagagaccctcct
gtgaaaatgcaaggtagcatcacaactcctggcagtattgcattggctcaggcacaggct
caagcacaggctcagaacaagacccctctcaccagacaagtcagcgccatagtaaccacg
tccacaaccactaccgtcaccaaagccactacggttaccaggccgagtggagtgagcttc
aagaaagatgtcccaccctccatcaatacaactaacatcgaaacattgttggtggccaca
gaccaggcagagagaatagtagagccaccagagaatattcaagaaaaagtggcttttatc
ttcaacaacctgtcgcaatccaacatgacacaaaaggtggaagagttaaaagagacagtg
aaagatgagtttatgccctgggtatcccagtatttggtcatgaagagagttagcattgaa
cctaattttcacagtctgtactccaactttatggacacgttgaagaattcagattttaac
aaaatggtactcacggagacttacaggaacattaaggtattgttgacctctgacaaggct
gcagcaaacttttcagatcggtcattgctgaagaatcttggccattggctaggcatgatc
accttagccaaaaataagcccatcttgcacattgatctggatgtgaagtcgttgctgctg
gaggcttatgtgaaaggtcagcaggagatgctctatgttgtcccctttgttgccaaagtt
ttagagtccagcgttaggagtatggtttttaggcccccaaatccttggacaatggccatc
atgaatgtactagcagagttgcatcaagagcatgatttgaagttaaacctgaagtttgaa
attgaggtgctgtgtaaaaatcttgctttggacatcaacgacttgaagcccggaacttta
ctaaaggacaaagaaaaattgacaaacctagaggaacaactttctgctccaaaaagagaa
tccaaaataccagaggagttgcctgtagttgtcaccactgctgcaccagtgactccagcc
acaaccaccacgtgtacatccacagtccctccacaaccacagttcagctaccacgacatc
aatgtgtattcattggctgccttggctcctcacattacagtcaacccaaatattccatta
ttccaggcccaccctcagctgaagtcgtacgtccggcaggcaatagagcgtgctgtgcag
gagcttgttcatcctgttgttgaccgttccatcaagattgccatgaccacatgtgaacag
atagtcaggaaagattttgctctggattctgaggagtcacggatgcgagttgcagcccat
cacatgatgcgtaacctcaccgcaggaatggctatgattacatgcagggagccattatta
atgagcatagctacaaacctaaagaataattttgccactgcattacggactgcttctcca
caacaaagggaaatgatggagcaagcagcagcacagatagcacaagacaactgcgagctg
gcctgttgctttattcagaaaacagctgttgaaaaagcgggtcctgaaatggacaaacgc
cttgccacagaatttgaacttcggaagcatgctaggcaggagggtcgtcgttactgtgat
cctgtggtgctcacttaccaggctgagcgcatgcctgaacaaatccgattgaaggtggga
ggtgtagatcccaagcaactagctgtgtatgaagagtttgcacgcaatatcccaggcttt
cttcccagtaatgacatttcacagccaactggtttcttggccaagcccatgcagcaagct
tgggcaactgacgatatcgcacagatttatgacaagtgcatcaccgaactagagcagcac
ctacatgcaattccaccaactctggccatgaaccctcagactcaggcacttcgtagctta
ctggaggctgtggtaatggccaggaactcccgtgacgctattgctgctctaggcctcttg
cagaaggctgtagagggactgctggatgccacaagtggtgcagacccagacctcctgctt
cgttatcgtgaatgccatttgttggttttgaaagccctgcaggacggtcgtgcttatgga
tcacagtggtgtaacaataaaatcaccaggtgcctgattgaatgtcgtgatgaatacaaa
tacaatgtggatgctgtggaattgctcattagacaccatctggtcaacatgcagcagtat
gacatccatttagcccagtcaatggaaaatggcttgaactatatggcagtagccttcgcc
atgcagttggttaagtttctgttggtcgatgagaggagcattagtcatgtaactgaagct
gatctgttcaataccattgaaacacttatgaggatcagtgctcattccagagggaatgca
cctgaaggattgccacagcttatggatttgcttcgagctaactacgaagctatgatggat
cgcgcgcacggtggccccaactttatgatgcactctgggatatcccaggcctctgaatac
gatgacccaccaggtcttcgagaaaaagctgagtatctgctgagagagtgggtaaacctc
tatcactctgcagcagctggacgggacagcaccaaagcgttctctgcctttgttgggcag
atgcaccagcagggaatcctcaagaccgatgacctgattactcgctttttccgactatgt
actgaaatgtgtgttgaaatcagttaccgtgcacaacaggagcagcagcacaatcctaca
gccaatcccacgatgatcagggccaagtgctatcacaacctggatgcatttgtcaggcta
atagccctgctggtcaagcattctggagaggccaccaacacagtcacaaaaattaacctt
ctcaacaaggtactggggattgttgttggagtactactacaagatcacgaagtacgtcag
agtgaatttcagcagctgccatatcatcgaatcttcatcatgttgttgctcgagctaaat
gcccctgagcatgtgctggaaacgatcaacttccagacactgactgctttctgcaacaca
tttcacatcttgcggcctactaaagctcctggctttgtctatgcttggctggaactaatt
tcccaccggatcttcattgcgagaatgctggcgcatacaccccaacagaagggctggccc
atgtatgcccagctgttgatcgatctgtttaagttcctggctccttacttgaggaatgtg
gagttgacaaaacctatgcaaattctttacaagggtacactgcgtgtcttgcttgtcctt
ttgcatgattttccagagttcctttgtgactaccattatggcttctgtgatgtgatcccg
ccaaactgtattcagctgcgaaacctgatcctgagtgccttcccacggaatatgcgactg
ccagatccattcaccccgaatctaaaggtggatatgctgagtgaaatcaacattgctcct
cggatattgaccaacttcacaggagtgatgccacctcagtttaagaaggacttggattcc
tatttgaagacgcggtcaccggtcacctttctctcagagttgcgcagtaacctgcaggtg
agcaggacaagggtatcaaacgaacctggtaatcggtataacatccagctaataaatgcc
ctggtgttgtatgtggggacgcaggcgattgctcacatccataacaagggcagcacacca
tccatgagcacgatcacacactctgcccacatggacatcttccagaacctggctgtcgac
cttgacacagaaggtcggtacttgttcctgaatgcgattgccaatcagttgcgttacccg
aacagccacactcactatttcagctgcactatgctgtatctgtttgctgaagccaacacc
gaagctatccaggagcagatcaccagggtgctgttggagaggctgattgtaaacaggcct
cacccatgggggctcctcatcaccttcattgagctgattaaaaaccccgccttcaaattc
tggaaccacgagtttgtccactgtgctcctgagattgaaaagttgttccagtctgtagct
cagtgctgtatgggacagaaacaggcacaacaagtaatggaaggcactggcgccagttaa
DBGET
integrated database retrieval system
