Vreelandella olivaria: HORIV_02360
Help
Entry
HORIV_02360 CDS
T06227
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hol
Vreelandella olivaria
Pathway
hol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HORIV_02360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hol03021
]
HORIV_02360 (rpoB)
03400 DNA repair and recombination proteins [BR:
hol03400
]
HORIV_02360 (rpoB)
Enzymes [BR:
hol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HORIV_02360 (rpoB)
Transcription machinery [BR:
hol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HORIV_02360 (rpoB)
DNA repair and recombination proteins [BR:
hol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HORIV_02360 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BBI47815
UniProt:
A0ABM7GBM5
LinkDB
All DBs
Position
159265..163281
Genome browser
AA seq
1338 aa
AA seq
DB search
MMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSVFPIESFSGNAALEYVSYRFG
TPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKDIKEQEVYMGEIPLMTENGTF
VINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARVIPYRGSWLDFEFDPKDNVFV
RIDRRRKLPASVLMRALGMNTEEILAEFFETSVFHIEKSGFSVELVPSRLRGETATFDIK
DGEGNVIVEEGRRITQKHIRQLEKAGLERLDVPMEYLFGKTLAKDQIDSKTGELICPCNT
EITPEVLERMAQGGITLVETLYTNDLDCGSFISDTLKLDATNSALEALVEIYRMMRPGEP
PTKESAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDTDTGSGVLDRKDILDVLRELINI
RNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINA
KPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHATHY
GRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVVDRQLTDDIVHLSAIEEGDFV
IAQASAAVDESNKLSDDLVQVRHRGETTFMRPEQVTLMDVSPRQVVSVAAALIPFLEHDD
ANRALMGSNMQRQAVPTLRADKPLVGTGMERFVARDSGVCAVANRGGVIDSVDARRVVVR
VNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGDSVARGDILADGPSVDMGDLA
LGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQELTCVSRDTKLGSEEITSDIP
NVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD
TSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIERTQLDEVRKDLQETYRIAEDATFERL
KRTLEGQAVNGGPNLKKGDVLDEAYLDELPRQQWFKLRLQDESFNELLAQADEQLETRRK
EMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPGDKMAGRHGNKGVISAIMPIE
DMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARGLGVKIEAMLRDARGQQVAEI
RDFLGQIYNTQGTRVEDLDSLTDDEIIALAKNLKGGVPMATPVFDGAKEHEIKHLLKLAD
IPESGQMALFDGRTGDAFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMYKNIVDGDHTMQAGMPESF
NVLVKEIRSLGIDIELES
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
gtgatggatgtgccttacttgctggcgatccagcttgattcctattacgacttcctccag
caagatcgttcgcccgacgagcgtcacgaggtcggtctgcacgcggcattcaagtccgtg
tttccgattgagagcttctccggcaatgcagcgcttgagtatgttagttaccgcttcggt
acgccggcgttcgatgttaaggagtgccagctgcgcggcgtgacttattcagccccgctg
cgcgtcaaggttcgcttgatcatctatgatcgcgactcctcgaacaaagcaatcaaagat
attaaagagcaagaagtctacatgggggaaatccccctgatgactgagaacggtaccttt
gtgatcaacggtactgagcgggtaatcgtatcccagctccaccgctcgcccggtgtgttc
ttcgatcacgataaaggcaagagccactcttccggcaagctgctctactcagcgcgcgtg
attccttaccgtggctcctggttagacttcgagtttgaccccaaagacaacgtcttcgta
cgtattgaccgtcgccgcaagctgccggcctcggtactgatgcgtgccctgggaatgaac
accgaagagatcctcgccgagttctttgaaaccagcgtcttccacatcgagaaatccggt
ttctctgtggagctggtgccgtcgcgtctgcgcggtgagaccgcgacgttcgacatcaag
gatggcgaaggcaatgtgatcgttgaagaggggcgtcggattacccagaagcacattcgt
cagcttgaaaaagccggccttgagcgtctggatgtgccgatggagtacctgttcggcaaa
accctggccaaagatcagattgattccaagaccggcgagctgatctgcccctgcaatacc
gagatcacgcctgaagtgcttgagcgtatggctcagggtggcattaccctggtggaaacg
ctctacaccaacgatcttgactgcggttcctttatttccgataccttgaagctggacgcg
acgaactccgcgcttgaagccctggtggaaatctaccgcatgatgcgtcccggcgagccg
ccgaccaaagagtctgctgaaacgctgtttaacaatctgttcttcagcgaagaccgctac
gatttgtcgggcgttggccgcatgaagttcaaccgtcgcctgcgccgtgatactgacacc
ggctctggcgtactggatcgcaaagacatccttgatgtattgcgcgagctgatcaatatc
cgtaacggcttcggtgacgttgacgatatcgatcacctgggtaaccgccgtattcgctgc
gttggcgaaatggcagagaaccagttccgcgttggcctggtacgcgttgagcgtgccgtg
aaagagcgtctttccatggcggaaagcgaaggcctgatgccgcaagacttgatcaacgcc
aagcccgttgcggcggcggtgaaggagttcttcggttccagtcagctttcccagtttatg
gatcagaacaacccgctttcggaagtgacccacaagcgtcgtgtgtctgcactcggcccc
ggtggtttgacccgtgagcgtgctggcttcgaagtacgtgacgttcacgccacgcactac
gggcgtctatgcccaatcgaaacgccagaaggcccgaacatcggtctgattaactcgctg
gccacctacagccacactaacagctacggtttccttgaaacgccgtaccgtaaagtggtt
gatcgtcagttgaccgacgacatcgttcacctctcggcgatcgaagagggcgactttgtt
atcgcccaggcgtcggcagcggtagatgagtccaacaagctaagtgatgacctggttcag
gtgcgtcaccgcggtgaaacgacctttatgcgtcctgagcaagtgacgctgatggacgta
tcgccacgtcaggtcgtatcagttgcagcggcattgattccgttcctggagcacgatgac
gccaaccgcgccttgatgggttctaacatgcagcgccaggcggtacccaccctgcgtgcc
gacaagccgctggtaggtactggcatggagcgctttgttgcccgtgactccggcgtctgt
gcggtggcgaatcgtggtggggttatcgactccgttgatgcacgtcgtgtggtagtacgg
gtcaatgaagatgaaatcatcggcggtgaagccggggttgatatctacaacctgaccaag
tacacccgctcgaaccagaacacctgcatgaaccagcgccccatcgtgcggcctggcgac
agcgtggcacgtggcgacattctcgccgacggcccgtcggtggatatgggtgatctggca
ttgggtcagaacatgcgtatcgcctttatgccctggaacggctacaactttgaggactcc
atcctgctttccgagcgggtcgttcaagaagaccgtttcaccacgattcacattcaggaa
ctcacctgtgtgtctcgcgacaccaagttgggttctgaagagattacctccgatatcccc
aacgtgggcgagtctgcgctctccaagctggatgaagcgggcgttgtctacatcggtgcc
gaagttggcccgggcgatattctggtcggtaaggtaacgccgaagggtgaaacccagctg
acgccggaagagaagctgctacgtgccatcttcggcgagaaagcgtctgacgttaaagac
acctcactgcgtgcccccaccggcatgaaaggtacggtcatcgacgttcaggtgtttact
cgcgacggcgtggagaaagactcacgcgccctgtcgatcgagcgcactcagttggacgaa
gttcgtaaggacctccaagagacttaccgtatcgccgaagacgccacctttgagcgtcta
aagcgtacccttgagggtcaggccgttaacggcggtccgaacctcaagaaaggtgatgtg
ctcgacgaagcgtacctggatgaattgccgcgtcagcagtggttcaagctgcgcttgcag
gacgagtcgtttaacgaactgctggctcaagccgacgaacagctggaaacccgtcgcaaa
gagatggacgagcgctttgaagacaagaagcgcaagctgacccagggcgatgacctcgcg
ccgggcgtgctgaagatcgtcaaggtctacatggccgtcaagcgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaaaggtgttatctcggcgattatgcccatcgaa
gacatgccgtttgacgagaagggcgagccggttgacgtggtgctcaacccactgggcgta
ccgtcacgtatgaacgtcggtcagatccttgagacgcacttgggtatggcggcacgtggc
ttgggcgtcaagatcgaagccatgctgcgcgatgcacgcggtcagcaagtagccgagatt
cgtgacttcctggggcagatctacaatacgcaaggtacgcgtgttgaagaccttgactcc
ctgaccgacgacgaaatcatcgccctggcgaagaacctgaaaggcggtgtgccgatggca
acaccggtgtttgacggtgccaaagagcacgaaatcaagcacctgttgaagctggcggac
attcccgaatcgggtcagatggccctgttcgatggccgtaccggtgacgcttttgaccgt
ccggtcaccgttggctacatgtacatgctgaagcttaaccacttggtagacgacaagatg
catgcgcgttctaccggttcttactcgctggttacccagcagcccttgggtggtaaggcg
caattcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagcttacggcgct
gcatacacgctacaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtataaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactcgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
DBGET
integrated database retrieval system
