Hafnia paralvei: AL518_03350
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Entry
AL518_03350 CDS
T05667
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hpar
Hafnia paralvei
Pathway
hpar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL518_03350 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpar03021
]
AL518_03350 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpar03400
]
AL518_03350 (rpoB)
Enzymes [BR:
hpar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL518_03350 (rpoB)
Transcription machinery [BR:
hpar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL518_03350 (rpoB)
DNA repair and recombination proteins [BR:
hpar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL518_03350 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1350
SPG4
Motif
Other DBs
NCBI-ProteinID:
AMH17154
UniProt:
A0A2A2M6M0
LinkDB
All DBs
Position
complement(743335..747363)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTEQILELFFDKVVFEIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDGITLIEVPVEYIAGKVVAKD
YIDENTGELICAANMELSLDLLAKLSQAGYKRIETLFTNDLDHGAYISETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIEVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGIVT
DEIHYLSAIEEGNYVIAQANSNLDDEGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHDVLVSGGVEAEKLAKLPRDRWLELGLADEAKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQQQEVAK
LREFIQKAYDLGDNTRQTVDLSTFTDDEVMRLAENLKKGLPIATPVFDGAKEKEIKELLT
LGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gttttggacataccttatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatccggaagggcaacacggcctggaagcagcattccgttccgtattcccaatccag
agttacagtggtaattccgagctgcagtatgtcagctatcgtctcggtgagccggtattc
gatgttaaagaatgccagatccgtggcgtaacttactccgctccgctgcgcgttaaactg
cgtttggttatttacgagcgtgaggcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgactgataacgggactttcgttatcaacggt
actgagcgcgtaatcgtatctcagttgcaccgtagcccaggcgtgttctttgacagcgat
aagggtaaaacccattcatcgggtaaagtgctgtataacgcacgtatcatcccttaccgt
ggttcatggttagacttcgaattcgatccgaaagacaacctgtttgtgcgtattgaccgt
cgccgtaaattacctgcgaccattattctgcgcgcattaaactttacgactgaacagatc
cttgagctgttcttcgacaaagttgtcttcgagattcgtgataataaactgcagatggag
cttgttccagagcgtctgcgtggcgaaactgcgtccttcgatatcgaagctgacggtaag
gtctatgttgaaaaaggccgccgtattaccgcacgccacattcgccaattggaaaaagac
ggcattacgctgatcgaagttccggttgagtacattgctggtaaagtcgtcgctaaagat
tatatcgacgaaaataccggtgagctgatctgtgcagccaacatggagctgtcactggat
ctgctggctaagctgagccaagcgggttacaagcgtatcgaaacgctgttcaccaacgac
ttggatcacggtgcttatatttctgagaccattcgcgtcgatccaactagcgaccgcttg
agtgcgctggttgaaatctatcgcatgatgcgtcctggtgagccaccaacacgcgaagca
gctgaaaacctgtttgagaacctgttcttctctgaagaccgctatgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgttgcgtgaagagattgaaggctccggtatcctg
agcaaagacgacatcattgaagtgatgcgtaaactcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacttgggtaaccgtcgtatccgttccgtgggcgaaatggct
gagaaccagttccgtgtaggtctggtacgtgttgagcgtgcagttaaagagcgtctgtct
ctgggcgacctcgatatgctgatgcctcaggacatgatcaacgccaagccaatttctgcc
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaaccca
ctgtcagaaattacgcataagcgtcgtatctccgcgttgggcccaggtggtttgactcgt
gagcgcgcaggctttgaagttcgagacgttcatccgactcactacggtcgtgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccctgtctgtttatgcacag
actaacgaatatggcttcttggaaaccccataccgccgcgttcgtgatggaattgtaact
gatgaaattcattacctgtctgctattgaagaaggcaactacgtcatcgctcaggcgaac
tccaacttggacgacgaaggccgcttcattgaagatctggttacttgccgtagcaaaggc
gaatcaagcttgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcttctctgatcccgttcttggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgtagccgtcgactccggtgttaccgctgttgctaaacgt
ggtggtgtaatccaatacgttgatgcttctcgtatcgttatcaaagttaacgaagatgag
atgtatccgggcgaagcaggcattgatatttacaacctgaccaaatacacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtcaatctgggtgaacccatcgagcgtggc
gacgtgctggctgacggcccgtctaccgatctgggtgaattggctctgggtcagaacatg
cgcgtggcattcatgccatggaacggttacaacttcgaagactccatcttggtgtctgag
cgtgttgtacaagaagatcgctttacttctatccacattcaagaactggcttgtgtgtct
cgtgacaccaaactggggcctgaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtttatatcggtgcggaagtgaaaggtggc
gacattctggttggtaaggtaacgcctaaaggtgaaacccaactgactccagaagagaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgcgtt
ccaaacagcgtttctggtaccgttattgatgtgcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgcttgaaatcgaagagatgcagctgaagcaggctaagaaagacctg
actgaagaactgcagatcttggaagctggcttgtttgcccgtatccacgacgtactggta
tctggtggtgttgaagctgagaaattggctaagctgccacgtgaccgctggttagaactg
ggtctggctgatgaagctaaacagaaccagttggaacagctggctgagcagtacgacgag
ctgaaatctgatttcgagaagaaactggatgctaagcgtcgtaagatcactcagggtgac
gatctggcaccaggcgtactgaaaattgttaaggtttatctggctgttaaacgtcagatc
cagcctggtgacaagatggcaggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtactccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattctggaaacccacttgggtatggct
gcgaaaggcattggtgagaaaattaacgccatgctgaagcagcagcaggaagtggccaag
ctgcgtgagttcattcagaaagcctacgatctgggcgataatacgcgtcagaccgttgat
ctgagcaccttcaccgacgacgaagttatgcgtctggctgagaacctgaaaaaaggtctg
ccaatcgcaacaccagtcttcgacggtgcgaaagagaaagaaatcaaagagcttctgaca
ttaggtggcattcctacctctggtcagattacgctgtttgatggccgtaccggcgagcag
ttcgagcgtcaggttactgtcggctacatgtatatgctgaaactgaaccacttggttgat
gacaaaatgcatgcgcgttctaccggttcttatagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggtgagatggaagtatgggcactggaagcg
tatggcgctgcctacacgctgcaggaaatgctgaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccgtatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctcggtattaacattgagctggaa
gacgagtaa
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