Helicobacter pylori B38: HELPY_0493
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Entry
HELPY_0493 CDS
T00950
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase (ADP-L-glycero-beta-D-manno-heptose-6-epimerase) (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep 6-epimerase) (AGME)
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hpb
Helicobacter pylori B38
Pathway
hpb00540
Lipopolysaccharide biosynthesis
hpb01100
Metabolic pathways
hpb01250
Biosynthesis of nucleotide sugars
Module
hpb_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
hpb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
HELPY_0493 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hpb01005
]
HELPY_0493 (rfaD)
Enzymes [BR:
hpb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
HELPY_0493 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hpb01005
]
Core region
HELPY_0493 (rfaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
FCSD_central
Ldh_1_N
KR
Motif
Other DBs
NCBI-ProteinID:
CAX29032
UniProt:
C7BZ30
LinkDB
All DBs
Position
487907..488899
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AA seq
330 aa
AA seq
DB search
MRYIDDGLENQTILITGGAGFVGSNLAFYFQENHPKAKVVILDKFRSNTLFSNNRPSSLG
HFKNLIGFKGEVIIADINNPLDLRHLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFL
NLLEIARSKKAKVIYASSAGVYGNTKAPNVVGSNENPENVYGFSKLCMDEFILSHSSDNI
QVGLRYFNVYGPREFYKEKTASMVLQLALQAMAFKEVKLFEFGEQLRDFVYIEDVIQANV
KAMKAQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVSYIKNPYAFFQKHTQAHIEPTIL
DLDYTPLYDLESGIKDYLPHIHAIFKGQRA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcgttatattgatgatggattagaaaatcaaacgattttaatcaccggtggggctggc
tttgtaggcagtaatttggccttttattttcaagagaaccaccctaaagctaaagtagtc
attttggataagtttcgcagtaacacgcttttcagtaataaccgcccgagttctttaggg
cattttaagaatttaatcggttttaagggcgaagtgatcatagctgatattaataatccc
ttagatttaaggcatttagaaaagttgcattttgattatttgttccaccaggccgctgtc
tctgatacgaccatgctcaatcaagaattagtgatgaaaaccaattatcaggctttttta
aaccttttagaaatcgctcgatcaaaaaaggctaaggtgatttacgcttcttcagcgggc
gtttatggcaacaccaaagcccccaatgtggtaggctcaaacgaaaaccctgaaaatgtt
tatggcttttccaagctttgcatggacgaatttattctttcgcattcaagcgataacatt
caagtgggcttaaggtattttaatgtctatgggcctagggaattttataaagaaaaaacc
gcttccatggttttgcaactcgctttgcaagcaatggcgtttaaggaagtcaagcttttt
gaatttggcgagcaattaagggattttgtctatattgaagatgtgatccaagcgaatgtg
aaagcgatgaaggctcaaaaaagcggggtttataatgtgggttattcgcaagccagaagt
tataatgaaatcgttagcattttaaaagagcatttaggggattttaaagtgagctatatt
aaaaacccttacgcttttttccaaaagcacacccaagcgcatattgagcctactattttg
gatttagattacacccctttatacgatttagaaagcggcattaaagattatttgccccat
atccatgcgatttttaaaggacagcgtgcatga
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